SMTL ID : 5o0v.1

crystal structure of E. coli GAP-DH by fortuitous crystallization as an impurity from a solution of human liver FBPase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: P.127, M.128, N.134, K.216 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.128, A:M.128, A:N.134, A:K.216 GOL.2: 7 residues within 4Å: Chain A: G.272, Y.273, F.283, E.286, C.288, V.291 Chain C: R.52 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:E.286, C:R.52, C:R.52 Water bridges: A:Y.273, A:T.274, A:D.276 GOL.3: 4 residues within 4Å: Chain B: P.127, M.128, N.134, K.216 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:M.128, B:M.128, B:N.134, B:K.216 GOL.4: 7 residues within 4Å: Chain B: G.272, Y.273, F.283, E.286, C.288, V.291 Chain D: R.52 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain D Hydrogen bonds: B:E.286, D:R.52, D:R.52 Water bridges: B:Y.273, B:T.274, B:D.276 GOL.5: 4 residues within 4Å: Chain C: P.127, M.128, N.134, K.216 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:M.128, C:M.128, C:N.134, C:K.216 GOL.6: 7 residues within 4Å: Chain A: R.52 Chain C: G.272, Y.273, F.283, E.286, C.288, V.291 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:E.286, A:R.52, A:R.52 Water bridges: C:Y.273, C:T.274, C:D.276 GOL.7: 4 residues within 4Å: Chain D: P.127, M.128, N.134, K.216 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:M.128, D:M.128, D:N.134, D:K.216 GOL.8: 7 residues within 4Å: Chain B: R.52 Chain D: G.272, Y.273, F.283, E.286, C.288, V.291 6 PLIP interactions: 4 interactions with chain D, 2 interactions with chain B Hydrogen bonds: D:E.286, B:R.52, B:R.52 Water bridges: D:Y.273, D:T.274, D:D.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruf, A. et al., fortuitous crystallization of GAP-DH impurity from a solution of human liver FBPase. To Be Published

Release Date

2017-07-12

Peptides

Glyceraldehyde-3-phosphate dehydrogenase A: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Glyceraldehyde-3-phosphate dehydrogenase A

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