- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.79 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GLC- GLC: alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose(Non-covalent)
- 2 x G3P: SN-GLYCEROL-3-PHOSPHATE(Non-covalent)
G3P.3: 9 residues within 4Å:- Chain A: V.130, K.131, G.132, A.133, N.134, F.135, D.136, E.266, M.267
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:G.132, A:A.133, A:F.135, A:D.136, A:D.136, A:E.266
G3P.11: 9 residues within 4Å:- Chain C: V.130, K.131, G.132, A.133, N.134, F.135, D.136, E.266, M.267
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:G.132, C:A.133, C:F.135, C:D.136, C:D.136, C:E.266
- 4 x ACT: ACETATE ION(Non-functional Binders)
ACT.4: 4 residues within 4Å:- Chain A: D.282, F.283, E.286
- Chain B: R.52
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:D.282, A:E.286
- Water bridges: A:V.287
- Salt bridges: B:R.52
ACT.6: 4 residues within 4Å:- Chain A: R.52
- Chain B: D.282, F.283, E.286
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Salt bridges: A:R.52
- Water bridges: B:G.285, B:V.287
ACT.12: 4 residues within 4Å:- Chain C: D.282, F.283, E.286
- Chain D: R.52
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:D.282
- Water bridges: C:V.287
- Salt bridges: D:R.52
ACT.14: 4 residues within 4Å:- Chain C: R.52
- Chain D: D.282, F.283, E.286
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:E.286
- Water bridges: D:G.285, D:V.287
- Salt bridges: C:R.52
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.5: 3 residues within 4Å:- Chain A: A.20, R.23, I.26
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.23, A:R.23
- Water bridges: A:I.28
NA.7: 3 residues within 4Å:- Chain B: A.20, R.23, I.26
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:A.20
- Water bridges: B:R.23, B:I.28
NA.13: 3 residues within 4Å:- Chain C: A.20, R.23, I.26
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:A.20, C:R.23
- Water bridges: C:I.28
NA.15: 3 residues within 4Å:- Chain D: A.20, R.23, I.26
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:A.20
- Water bridges: D:R.23, D:I.28
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.8: 7 residues within 4Å:- Chain B: V.130, K.131, G.132, A.133, N.134, F.135, D.136
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:G.132, B:G.132, B:A.133, B:F.135, B:D.136
PO4.16: 7 residues within 4Å:- Chain D: V.130, K.131, G.132, A.133, N.134, F.135, D.136
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:G.132, D:G.132, D:A.133, D:F.135, D:D.136
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rodriguez-Hernandez, A. et al., A Novel Substrate-Binding Site in the X-Ray Structure of an Oxidized E. coli Glyceraldehyde 3-Phosphate Dehydrogenase Elucidated by Single-Wavelength Anomalous Dispersion. Crystals (2019)
- Release Date
- 2019-12-11
- Peptides
- Glyceraldehyde-3-phosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.79 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GLC- GLC: alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose(Non-covalent)
- 2 x G3P: SN-GLYCEROL-3-PHOSPHATE(Non-covalent)
- 4 x ACT: ACETATE ION(Non-functional Binders)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rodriguez-Hernandez, A. et al., A Novel Substrate-Binding Site in the X-Ray Structure of an Oxidized E. coli Glyceraldehyde 3-Phosphate Dehydrogenase Elucidated by Single-Wavelength Anomalous Dispersion. Crystals (2019)
- Release Date
- 2019-12-11
- Peptides
- Glyceraldehyde-3-phosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B