SMTL ID : 5o1n.1

Crystal structure of human aminoadipate semialdehyde synthase, saccharopine dehydrogenase domain with N-[(2S)-2-Pyrrolidinylmethyl]-trifluoromethanesulfonamide bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

homo-dimer

Ligands

2 x 9H8: 1,1,1-tris(fluoranyl)-~{N}-[[(2~{S})-pyrrolidin-2-yl]methyl]methanesulfonamide(Non-covalent)

9H8.1: 11 residues within 4Å: Chain A: D.175, G.205, G.206, Y.219, W.223, N.273, T.295, R.297, M.441 Ligands: DMS.2, PEG.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.206, A:T.295, A:R.297, A:R.297 Water bridges: A:N.273 Halogen bonds: A:G.206 9H8.5: 11 residues within 4Å: Chain B: D.175, G.205, G.206, Y.219, W.223, N.273, T.295, R.297, M.441 Ligands: DMS.6, PEG.8 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.206, B:T.295, B:R.297, B:R.297 Water bridges: B:N.273 Halogen bonds: B:G.206

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 8 residues within 4Å: Chain A: Y.219, F.221, S.222, W.223, S.224, P.225, V.228 Ligands: 9H8.1 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:W.223 DMS.6: 8 residues within 4Å: Chain B: Y.219, F.221, S.222, W.223, S.224, P.225, V.228 Ligands: 9H8.5 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.219 pi-Cation interactions: B:W.223

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: N.246, A.248 No protein-ligand interaction detected (PLIP) EDO.7: 2 residues within 4Å: Chain B: N.246, A.248 No protein-ligand interaction detected (PLIP)

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 9 residues within 4Å: Chain A: A.147, S.148, L.172, L.174, D.175, P.176, W.223, V.445 Ligands: 9H8.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.147 PEG.8: 9 residues within 4Å: Chain B: A.147, S.148, L.172, L.174, D.175, P.176, W.223, V.445 Ligands: 9H8.5 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kopec, J. et al., Crystal structure of human aminoadipate semialdehyde synthase, saccharopine dehydrogenase domain with N-[(2S)-2-Pyrrolidinylmethyl]-trifluoromethanesulfonamide bound. To Be Published

Release Date

2017-05-31

Peptides

Alpha-aminoadipic semialdehyde synthase, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Alpha-aminoadipic semialdehyde synthase, mitochondrial

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