SMTL ID : 5o5p.1 (3 other biounits)

Poliovirus type 3 (strain Saukett) stabilized virus-like particle in complex with the pocket factor compound GPP3

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x 9LW: 1-[5-[4-(ethoxyiminomethyl)phenoxy]-3-methyl-pentyl]-3-pyridin-4-yl-imidazol-2-one(Non-covalent)

9LW.1: 13 residues within 4Å: Chain A: T.109, Y.110, M.130, Y.157, P.179, S.180, I.181, I.192, V.194, Y.203, D.235, F.236 Chain C: A.24 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:Y.110, A:P.179, A:I.181, A:V.194, A:V.194, A:Y.203, A:F.236, C:A.24 Hydrogen bonds: A:D.235 pi-Stacking: A:Y.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marsian, J. et al., Plant-made polio type 3 stabilized VLPs-a candidate synthetic polio vaccine. Nat Commun (2017)

Release Date

2017-07-12

Peptides

Capsid proteins, VP1: A
Capsid proteins, VP2: B
Capsid proteins, VP3: C
Capsid proteins, VP4: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

C
3

D
4

Capsid proteins, VP1

Capsid proteins, VP2

Capsid proteins, VP3

Capsid proteins, VP4

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