SMTL ID : 8ayx.1

Poliovirus type 3 (strain Saukett) stabilised virus-like particle (PV3 SC8) in complex with GSH and GPP3

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x YM2: 1-[(3S)-5-[4-[(E)-ETHOXYIMINOMETHYL]PHENOXY]-3-METHYL-PENTYL]-3-PYRIDIN-4-YL-IMIDAZOLIDIN-2-ONE(Non-covalent)

YM2.1: 17 residues within 4Å: Chain A: I.108, T.109, Y.110, K.111, M.130, L.132, I.155, Y.157, P.179, S.180, I.181, I.192, V.194, Y.203, S.204, H.205, F.236 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.132, A:Y.157, A:Y.157, A:I.181, A:V.194, A:F.236

1 x GSH: GLUTATHIONE(Non-covalent)

GSH.2: 6 residues within 4Å: Chain A: I.87, R.257 Chain C: Q.233, S.234, A.235, L.236 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.257

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bahar, M.W. et al., A conserved glutathione binding site in poliovirus is a target for antivirals and vaccine stabilisation. Commun Biol (2022)

Release Date

2022-12-07

Peptides

Capsid protein, VP1: A
Capsid protein, VP0: B
Capsid protein, VP3: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Capsid protein, VP1

Capsid protein, VP0

Capsid protein, VP3

Related Entries With Identical Sequence