SMTL ID : 5o6v.1

The cryo-EM structure of Tick-borne encephalitis virus complexed with Fab fragment of neutralizing antibody 19/1786

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 3.90 Å

Oligo State

hetero-3-3-2-2-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.154 Chain B: H.104 No protein-ligand interaction detected (PLIP) NAG.2: 3 residues within 4Å: Chain A: H.104 Chain B: N.154, E.155 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.155 NAG.3: 2 residues within 4Å: Chain C: N.154, E.155 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.155, C:E.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fuzik, T. et al., Structure of tick-borne encephalitis virus and its neutralization by a monoclonal antibody. Nat Commun (2018)

Release Date

2018-02-07

Peptides

Envelope protein: ABC
Small envelope protein M: DEF
Fab 19/1786 - Heavy chain: GH
Fab 19/1786 - Light chain: IJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
H

H
I

I
L

J
M

Envelope protein

Small envelope protein M

Fab 19/1786 - Heavy chain

Fab 19/1786 - Light chain

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