SMTL ID : 5oa2.3 (2 other biounits)

Crystal structure of ScGas2 in complex with compound 8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x BGC- BGC- BGC: beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose

BGC-BGC-BGC.1: 11 residues within 4Å: Chain A: N.216, D.217, D.218, A.219, R.222, E.245, C.247, T.254, S.255, R.260 Ligands: 9PW.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.216, A:D.217, A:D.218 Water bridges: A:E.176, A:E.176, A:E.176, A:D.217, A:A.219

1 x 9PW: [4-[[1-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-4-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-4-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,5-bis(oxidanyl)oxan-2-yl]oxy-3,5-bis(oxidanyl)oxan-2-yl]-1,2,3-triazol-4-yl]methoxymethyl]phenyl]-oxidanyl-oxidanylidene-azanium(Non-covalent)

9PW.2: 17 residues within 4Å: Chain A: Q.60, Y.107, D.132, S.134, E.135, P.136, S.139, I.140, N.141, R.142, N.175, V.177, Y.244, E.275, Y.307, Y.316 Ligands: BGC-BGC-BGC.1 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:Y.107, A:S.134, A:S.134, A:P.136, A:S.139, A:I.140, A:R.142, A:N.175, A:Y.307 Water bridges: A:I.140 pi-Stacking: A:Y.244

13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: R.195, V.234 Ligands: EDO.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.195 Water bridges: A:L.381, A:L.381, A:P.382 EDO.4: 4 residues within 4Å: Chain A: R.195, E.383, T.384 Ligands: EDO.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.383, A:E.383, A:T.384, A:T.384 EDO.5: 8 residues within 4Å: Chain A: P.382, E.383, Y.436, G.437, E.438, S.440, D.441 Ligands: EDO.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.383, A:D.441 EDO.6: 3 residues within 4Å: Chain A: V.422, D.423, K.458 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.423, A:K.458 EDO.7: 2 residues within 4Å: Chain A: F.52, N.102 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.102 EDO.8: 5 residues within 4Å: Chain A: K.380, L.381, E.383, Y.436 Ligands: EDO.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.381, A:Y.436 Water bridges: A:L.381, A:Y.436 EDO.9: 5 residues within 4Å: Chain A: R.195, K.198, D.233, V.234, K.235 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.198, A:K.235, A:K.235 EDO.10: 7 residues within 4Å: Chain A: K.198, I.201, S.202, K.208, I.209, P.210, D.237 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.237 Water bridges: A:K.198 EDO.11: 1 residues within 4Å: Chain A: N.205 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.205 EDO.12: 3 residues within 4Å: Chain A: K.37, I.38, K.208 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.38, A:I.38 Water bridges: A:K.208 EDO.13: 6 residues within 4Å: Chain A: A.219, M.220, T.221, R.222, D.223, N.224 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.222, A:D.223, A:N.224, A:N.224 Water bridges: A:N.224 EDO.14: 1 residues within 4Å: Chain A: R.258 No protein-ligand interaction detected (PLIP) EDO.15: 2 residues within 4Å: Chain A: H.150, E.445 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.445 Water bridges: A:V.444

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Delso, I. et al., Inhibitors against Fungal Cell Wall Remodeling Enzymes. ChemMedChem (2018)

Release Date

2018-05-02

Peptides

1,3-beta-glucanosyltransferase GAS2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

1,3-beta-glucanosyltransferase GAS2

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