SMTL ID : 5oae.1

Crystal Structure of tyrosinase from Bacillus megaterium with SVF inhibitor in the active site

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

4 x CU: COPPER (II) ION(Non-covalent)

CU.1: 5 residues within 4Å: Chain A: H.201, H.205, F.224, H.228 Ligands: SVF.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.201, A:H.205, A:H.228 CU.2: 5 residues within 4Å: Chain A: H.39, H.57, H.66, F.224 Ligands: SVF.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.39, A:H.57, A:H.66 CU.4: 6 residues within 4Å: Chain B: H.39, H.57, H.66, F.224, H.228 Ligands: SVF.6 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.39, B:H.57, B:H.66 CU.5: 5 residues within 4Å: Chain B: H.201, H.205, F.224, H.228 Ligands: SVF.6 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.201, B:H.205, B:H.228

2 x SVF: 1-[4-[(4-fluorophenyl)methyl]piperidin-1-yl]ethanone(Non-covalent)

SVF.3: 16 residues within 4Å: Chain A: H.39, H.57, H.66, P.198, H.201, N.202, H.205, R.206, G.213, V.214, V.215, A.218, F.224, H.228 Ligands: CU.1, CU.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:P.198, A:H.205, A:V.215, A:A.218, A:F.224 Hydrogen bonds: A:R.206 pi-Stacking: A:H.205 SVF.6: 14 residues within 4Å: Chain B: H.39, H.57, H.66, P.198, H.201, N.202, H.205, R.206, G.213, V.214, V.215, A.218 Ligands: CU.4, CU.5 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:P.198, B:V.215, B:A.218 pi-Stacking: B:H.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferro, S. et al., Targeting Tyrosinase: Development and Structural Insights of Novel Inhibitors Bearing Arylpiperidine and Arylpiperazine Fragments. J. Med. Chem. (2018)

Release Date

2018-04-25

Peptides

Tyrosinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tyrosinase

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