SMTL ID : 5obu.1

Mycoplasma genitalium DnaK deletion mutant lacking SBDalpha in complex with AMPPNP.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.12 Ligands: ANP.2 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.12, H2O.1, H2O.5, H2O.6, H2O.7

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 22 residues within 4Å: Chain A: D.12, G.14, T.15, T.16, N.17, G.179, G.180, G.181, T.182, G.208, D.209, E.247, K.250, I.251, S.254, G.321, G.322, S.323, R.325, M.326, D.349 Ligands: MG.1 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:T.15, A:T.15, A:T.16, A:N.17, A:G.179, A:G.180, A:G.181, A:T.182, A:T.182, A:E.247, A:E.247, A:K.250, A:S.254, A:S.254, A:G.322 Water bridges: A:D.12, A:N.17, A:K.72, A:K.72, A:K.72, A:T.182

1 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.3: 1 residues within 4Å: Chain A: K.331 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adell, M. et al., The nucleotide-bound/substrate-bound conformation of the Mycoplasma genitalium DnaK chaperone. Protein Sci. (2018)

Release Date

2018-05-09

Peptides

Chaperone protein DnaK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chaperone protein DnaK

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