SMTL ID : 5obv.1

Mycoplasma genitalium DnaK deletion mutant lacking SBDalpha in complex with ADP and Pi.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 18 residues within 4Å: Chain A: G.14, T.15, T.16, N.17, G.179, G.180, G.208, E.247, K.250, I.251, S.254, G.321, G.322, S.323, R.325, M.326, D.349 Ligands: PO4.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:T.16, A:N.17, A:N.17, A:G.180, A:E.247, A:E.247, A:K.250, A:S.254, A:G.322 Water bridges: A:D.12

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 8 residues within 4Å: Chain A: G.14, T.15, K.72, P.126, E.154, D.177, T.182 Ligands: ADP.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.15, A:T.15, A:T.15 Water bridges: A:T.15, A:T.15 Salt bridges: A:K.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adell, M. et al., The nucleotide-bound/substrate-bound conformation of the Mycoplasma genitalium DnaK chaperone. Protein Sci. (2018)

Release Date

2018-05-09

Peptides

Chaperone protein DnaK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chaperone protein DnaK

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