SMTL ID : 5odx.1

Crystal Structure of Hsp90-alpha N-Domain in complex with Indazole derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

monomer

Ligands

1 x 9RZ: 3-[(3~{S})-3-methoxypiperidin-1-yl]carbonyl-~{N}-methyl-~{N}-(4-morpholin-4-ylphenyl)-6-oxidanyl-1~{H}-indazole-5-carboxamide(Non-covalent)

9RZ.1: 18 residues within 4Å: Chain A: L.41, N.44, S.45, D.47, A.48, D.86, I.89, G.90, M.91, L.96, L.100, G.128, F.131, V.143, W.155, T.177, V.179 Ligands: DMS.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:N.44, A:L.100, A:F.131, A:T.177 Hydrogen bonds: A:N.44, A:G.90 Water bridges: A:L.41, A:G.88, A:G.128, A:F.131, A:T.177

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 2 residues within 4Å: Chain A: K.51 Ligands: 9RZ.1 No protein-ligand interaction detected (PLIP) DMS.3: 1 residues within 4Å: Chain A: Y.54 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:Y.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schuetz, D.A. et al., Ligand Desolvation Steers On-Rate and Impacts Drug Residence Time of Heat Shock Protein 90 (Hsp90) Inhibitors. J. Med. Chem. (2018)

Release Date

2018-04-18

Peptides

Heat shock protein HSP 90-alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Heat shock protein HSP 90-alpha

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