SMTL ID : 5oeq.1 (1 other biounit)

Mycobacterium tuberculosis DprE1 in complex with inhibitor TCA020

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 33 residues within 4Å: Chain A: W.32, I.68, A.69, R.70, G.71, L.72, G.73, R.74, S.75, Y.76, N.79, A.80, M.90, A.110, P.132, G.133, T.134, V.137, T.138, G.140, G.141, A.144, C.145, I.147, H.148, N.194, G.195, G.198, I.199, I.200, Y.431, A.433 Ligands: P95.2 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:W.32, A:R.74, A:Y.76, A:T.134 Hydrogen bonds: A:A.69, A:G.71, A:L.72, A:G.73, A:R.74, A:S.75, A:N.79, A:G.133, A:T.138, A:H.148, A:H.148, A:I.200, A:I.200, A:Y.431 Water bridges: A:G.73, A:G.140, A:G.140, A:H.148 pi-Cation interactions: A:K.434

1 x P95: ~{N}-[3-(pyrimidin-2-ylcarbamoyl)thiophen-2-yl]-[1,3]thiazolo[4,5-c]pyridine-2-carboxamide(Non-covalent)

P95.2: 15 residues within 4Å: Chain A: Y.76, H.148, G.149, K.150, S.244, W.246, Y.330, P.332, Q.350, Q.352, V.381, K.383, N.401, K.434 Ligands: FAD.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.246, A:V.381, A:K.383 Hydrogen bonds: A:Y.76, A:S.244, A:Q.352, A:K.434

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.3: 2 residues within 4Å: Chain A: S.98, D.100 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.98, A:D.100, A:D.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, R. et al., Determinants of the Inhibition of DprE1 and CYP2C9 by Antitubercular Thiophenes. Angew. Chem. Int. Ed. Engl. (2017)

Release Date

2018-05-16

Peptides

Decaprenylphosphoryl-beta-D-ribose oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Decaprenylphosphoryl-beta-D-ribose oxidase

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