SMTL ID : 5ofv.1

Crystal structure of human 3-phosphoglycerate dehydrogenase in complex with 5-fluoro-2-methylbenzoic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x 9TZ: 5-fluoranyl-2-methyl-benzoic acid(Non-covalent)

9TZ.1: 10 residues within 4Å: Chain A: G.60, Y.82, D.83, P.84, L.101, T.115, P.116, S.120, T.121, L.124 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.82, A:T.115, A:T.121 Hydrogen bonds: A:D.83 9TZ.2: 11 residues within 4Å: Chain B: L.59, G.60, Y.82, D.83, P.84, L.101, T.115, P.116, S.120, T.121, L.124 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Y.82, B:T.115, B:T.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Unterlass, J.E. et al., Validating and enabling phosphoglycerate dehydrogenase (PHGDH) as a target for fragment-based drug discovery in PHGDH-amplified breast cancer. Oncotarget (2018)

Release Date

2017-08-16

Peptides

D-3-phosphoglycerate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

D-3-phosphoglycerate dehydrogenase

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