SMTL ID : 5oge.2 (3 other biounits)

Crystal structure of a nucleotide sugar transporter

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.22 Å

Oligo State

homo-dimer

Ligands

2 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.1: 16 residues within 4Å: Chain A: M.140, L.147, V.154, L.310, I.314, L.317, I.321, K.328 Chain B: I.116, L.120, I.123, Y.127, L.142, L.146, V.149, V.153 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:Y.127, A:L.310, A:I.314 Hydrogen bonds: A:K.328 OLC.2: 5 residues within 4Å: Chain A: F.93, L.94, L.97, Y.100, W.187 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.93, A:L.97, A:L.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parker, J.L. et al., Structural basis of nucleotide sugar transport across the Golgi membrane. Nature (2017)

Release Date

2017-11-22

Peptides

GDP-mannose transporter 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
G

Membrane

We predict this structure to be a membrane protein.
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GDP-mannose transporter 1

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