SMTL ID : 5ogk.3 (3 other biounits)

Crystal structure of a nucleotide sugar transporter with bound nucleotide sugar.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

homo-dimer

Ligands

1 x GDD: GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE(Non-covalent)

GDD.1: 18 residues within 4Å: Chain A: Y.28, M.35, M.98, S.102, L.106, Y.114, T.115, K.118, M.202, M.217, N.220, N.221, I.265, S.266, S.269, G.270, Y.281, K.289 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:Y.114, A:N.220, A:N.221, A:S.269, A:S.269, A:G.270, A:Y.281, A:Y.281 Salt bridges: A:K.118, A:K.118, A:K.289

1 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.2: 9 residues within 4Å: Chain A: I.33, V.37, F.41, P.291, I.292, S.295, G.296, F.299, F.300 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.33, A:V.37, A:I.292, A:F.300

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parker, J.L. et al., Structural basis of nucleotide sugar transport across the Golgi membrane. Nature (2017)

Release Date

2017-11-22

Peptides

GDP-mannose transporter 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
F

Membrane

We predict this structure to be a membrane protein.
Show / Hide

GDP-mannose transporter 1

Related Entries With Identical Sequence