SMTL ID : 5ogr.3 (2 other biounits)

Structure of cathepsin B1 from Schistosoma mansoni in complex with WRR286 inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x VS4: 3-[[N-[4-METHYL-PIPERAZINYL]CARBONYL]-PHENYLALANINYL-AMINO]-5-PHENYL-PENTANE-1-SULFONIC ACID BENZYLOXY-AMIDE(Covalent)

VS4.1: 20 residues within 4Å: Chain A: Q.25, G.29, C.31, W.32, L.70, C.72, E.73, G.74, G.75, I.76, L.77, G.175, F.176, V.178, L.198, G.199, G.200, H.201, W.223, E.247 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.77, A:L.198, A:E.247 Hydrogen bonds: A:Q.25, A:G.75, A:G.75, A:G.200

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 4 residues within 4Å: Chain A: F.7, D.8, K.11, K.12 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.7, A:K.11 Hydrogen bonds: A:D.8, A:D.8 Salt bridges: A:K.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jilkova, A. et al., Druggable Hot Spots in the Schistosomiasis Cathepsin B1 Target Identified by Functional and Binding Mode Analysis of Potent Vinyl Sulfone Inhibitors. Acs Infect Dis. (2020)

Release Date

2018-11-21

Peptides

Cathepsin B-like peptidase (C01 family): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Cathepsin B-like peptidase (C01 family)

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