SMTL ID : 8cd9.1

Cathepsin B1 from Schistosoma mansoni in complex with gallinamide analog 6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x UA9: [(2~{S})-1-[[(2~{S})-1-[[(2~{S})-5-[(2~{S})-3-methoxy-5-oxidanylidene-2-(phenylmethyl)-2~{H}-pyrrol-1-yl]-5-oxidanylidene-pentan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl] (2~{S})-2-(dimethylamino)-3-phenyl-propanoate(Covalent)

UA9.1: 14 residues within 4Å: Chain A: Q.25, G.29, C.31, W.32, L.70, E.73, G.74, G.75, L.77, V.178, G.199, G.200, H.201, W.223 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.70, A:L.70, A:L.77 Hydrogen bonds: A:Q.25, A:G.75, A:G.75, A:G.200 Water bridges: A:G.200, A:G.200 pi-Stacking: A:W.223

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: S.63, C.65 1 PLIP interactions: 1 interactions with chain A Water bridges: A:C.130

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: D.226, W.227, G.228 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rubesova, P. et al., Cathepsin B1 from Schistosoma mansoni in complex with gallinamide analog 6. To Be Published

Release Date

2024-02-21

Peptides

Cathepsin B-like peptidase (C01 family): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Cathepsin B-like peptidase (C01 family)

Related Entries With Identical Sequence