SMTL ID : 5oj2.1 (1 other biounit)

Crystal structure of the chicken MDGA1 ectodomain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 9 residues within 4Å: Chain A: N.313, T.315, Q.317, H.340, D.342, P.376, E.474, R.499, Y.500 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.376

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: G.237, D.238, N.239, W.278 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.237 NAG.3: 4 residues within 4Å: Chain A: Q.243, Q.271, G.272, N.274 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.243, A:N.274 NAG.4: 6 residues within 4Å: Chain A: S.258, S.260, Y.287, N.289, K.301, T.303 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.258, A:S.260, A:S.260, A:N.289, A:K.301 NAG.5: 3 residues within 4Å: Chain A: S.629, N.631, N.686 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.629, A:N.631 NAG.6: 1 residues within 4Å: Chain A: N.217 No protein-ligand interaction detected (PLIP) NAG.7: 3 residues within 4Å: Chain A: T.394, E.412, N.414 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.412, A:E.412, A:E.412 NAG.8: 1 residues within 4Å: Chain A: N.72 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.72 NAG.9: 5 residues within 4Å: Chain A: F.558, N.559, R.583, E.584, S.586 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.558 Hydrogen bonds: A:N.559, A:S.586

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Elegheert, J. et al., Structural Mechanism for Modulation of Synaptic Neuroligin-Neurexin Signaling by MDGA Proteins. Neuron (2017)

Release Date

2017-08-23

Peptides

MAM domain-containing glycosylphosphatidylinositol anchor protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MAM domain-containing glycosylphosphatidylinositol anchor protein 1

Related Entries With Identical Sequence