SMTL ID : 5oj2.2 (1 other biounit)

Crystal structure of the chicken MDGA1 ectodomain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 8 residues within 4Å: Chain A: N.313, T.315, Q.317, H.340, D.342, P.376, E.474, Y.500 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.376

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.217 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.217 NAG.3: 3 residues within 4Å: Chain A: N.239, W.278, R.279 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.239 NAG.4: 7 residues within 4Å: Chain A: S.258, H.259, S.260, Y.287, N.289, K.301, T.303 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.258, A:S.260, A:S.260, A:S.260, A:N.289, A:K.301, A:T.303 NAG.5: 3 residues within 4Å: Chain A: L.71, N.72, T.74 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.72, A:T.74 NAG.6: 3 residues within 4Å: Chain A: T.394, E.412, N.414 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.394, A:E.412 NAG.7: 5 residues within 4Å: Chain A: F.558, N.559, R.583, E.584, S.586 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.558 Hydrogen bonds: A:N.559, A:S.586 NAG.8: 3 residues within 4Å: Chain A: K.630, N.631, N.686 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.630, A:K.630

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Elegheert, J. et al., Structural Mechanism for Modulation of Synaptic Neuroligin-Neurexin Signaling by MDGA Proteins. Neuron (2017)

Release Date

2017-08-23

Peptides

MAM domain-containing glycosylphosphatidylinositol anchor protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

MAM domain-containing glycosylphosphatidylinositol anchor protein 1

Related Entries With Identical Sequence