SMTL ID : 5okl.1 (1 other biounit)

Human afamin monoclinic crystal form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 4 residues within 4Å: Chain A: L.307, E.377, D.378, N.381 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 6 residues within 4Å: Chain A: Y.106, L.207, K.208, F.209, G.210, N.467 No protein-ligand interaction detected (PLIP)

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: M.264, P.287, R.289, G.290 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain A: N.149, P.150, F.151, V.152, K.200 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Naschberger, A. et al., Structural Evidence for a Role of the Multi-functional Human Glycoprotein Afamin in Wnt Transport. Structure (2017)

Release Date

2017-12-06

Peptides

Afamin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Afamin

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