SMTL ID : 5okl.2 (1 other biounit)

Human afamin monoclinic crystal form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 6 residues within 4Å: Chain A: Y.106, L.207, K.208, F.209, G.210, N.467 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: D.378, N.381 No protein-ligand interaction detected (PLIP)

1 x PAM: PALMITOLEIC ACID(Non-covalent)

PAM.3: 9 residues within 4Å: Chain A: Y.198, I.221, L.222, K.225, N.244, M.264, I.294, K.298, N.452 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.198, A:I.221, A:L.222, A:K.225, A:I.294, A:I.294 Water bridges: A:N.452 Salt bridges: A:K.298

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: M.264, P.287, R.289, G.290 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Naschberger, A. et al., Structural Evidence for a Role of the Multi-functional Human Glycoprotein Afamin in Wnt Transport. Structure (2017)

Release Date

2017-12-06

Peptides

Afamin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Afamin

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