SMTL ID : 5ona.1 (1 other biounit)

Drosophila Bag-of-marbles CBM peptide bound to human CAF40-CNOT1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-1-mer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.214, K.216, V.217 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.217 Salt bridges: A:R.214, A:K.216 SO4.2: 5 residues within 4Å: Chain A: R.208, M.209 Chain B: D.39, P.42, M.43 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.204, A:R.208, B:D.39 Salt bridges: A:R.208 SO4.3: 3 residues within 4Å: Chain A: K.70, T.74 Chain B: H.102 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.74 Salt bridges: A:K.70, B:H.102 SO4.4: 2 residues within 4Å: Chain A: R.233, P.240 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.233 SO4.6: 2 residues within 4Å: Chain B: Y.186, R.193 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.193 SO4.7: 4 residues within 4Å: Chain B: H.73, N.76 Chain C: D.1, Q.4 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.76 Salt bridges: B:H.73 SO4.8: 2 residues within 4Å: Chain B: R.234, R.238 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.234, B:R.238 SO4.9: 7 residues within 4Å: Chain B: S.31, R.34, C.79, N.80, Y.122 Chain C: N.8, Q.11 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.80, B:Y.122 Salt bridges: B:R.34

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 1 residues within 4Å: Chain A: R.50 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain B: R.118 Chain C: K.10 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sgromo, A. et al., DrosophilaBag-of-marbles directly interacts with the CAF40 subunit of the CCR4-NOT complex to elicit repression of mRNA targets. RNA (2018)

Release Date

2017-12-27

Peptides

CCR4-NOT transcription complex subunit 1: A
CCR4-NOT transcription complex subunit 9: B
Protein bag-of-marbles: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

CCR4-NOT transcription complex subunit 1

CCR4-NOT transcription complex subunit 9

Protein bag-of-marbles

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