SMTL ID : 5oon.1

Structure of Undecaprenyl-Pyrophosphate Phosphatase, BacA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

2 x HG: MERCURY (II) ION(Non-covalent)

HG.1: 3 residues within 4Å: Chain A: P.110, C.171, C.174 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.171, A:C.171, A:C.174 HG.2: 2 residues within 4Å: Chain A: C.147 Ligands: OLC.5 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.147

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 3 residues within 4Å: Chain A: R.154, R.164, M.194 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.154, A:R.154, A:R.164, A:M.194

2 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.4: 11 residues within 4Å: Chain A: V.25, L.28, T.29, L.32, H.39, L.257, R.260, I.261, P.265, F.266, Y.269 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.25, A:L.28, A:T.29, A:L.32, A:L.257, A:L.257, A:I.261, A:F.266, A:Y.269, A:Y.269 Hydrogen bonds: A:R.260 OLC.5: 7 residues within 4Å: Chain A: V.137, L.140, A.144, C.147, L.148, L.175 Ligands: HG.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.140, A:A.144, A:L.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

El Ghachi, M. et al., Crystal structure of undecaprenyl-pyrophosphate phosphatase and its role in peptidoglycan biosynthesis. Nat Commun (2018)

Release Date

2018-03-21

Peptides

Undecaprenyl-diphosphatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Undecaprenyl-diphosphatase

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