SMTL ID : 5opd.1 (1 other biounit)

Structure of phosphorylated EF-Tu in complex with GTP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

14 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: V.21, G.84, H.85, Q.115 Ligand excluded by PLIP IOD.2: 3 residues within 4Å: Chain A: F.195, S.198, Y.199 Ligand excluded by PLIP IOD.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: F.324, Y.327 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: H.320, T.321 Ligand excluded by PLIP IOD.6: 4 residues within 4Å: Chain A: R.234, I.299, R.334, D.370 Ligand excluded by PLIP IOD.7: 3 residues within 4Å: Chain A: F.262, R.263, K.264 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain A: A.97, M.99 Ligand excluded by PLIP IOD.9: 4 residues within 4Å: Chain A: E.306, K.358, M.359, V.360 Ligand excluded by PLIP IOD.10: 3 residues within 4Å: Chain A: V.348, I.357 Ligands: GOL.19 Ligand excluded by PLIP IOD.11: 2 residues within 4Å: Chain A: H.85, E.118 Ligand excluded by PLIP IOD.12: 3 residues within 4Å: Chain A: L.212, E.233, R.334 Ligand excluded by PLIP IOD.13: 3 residues within 4Å: Chain A: C.138, R.172, W.185 Ligand excluded by PLIP IOD.14: 3 residues within 4Å: Chain A: S.254, T.255, R.280 Ligand excluded by PLIP

1 x MG: MAGNESIUM ION(Non-covalent)

MG.15: 4 residues within 4Å: Chain A: T.26, D.51, C.82 Ligands: GTP.16 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.26, H2O.1, H2O.1, H2O.1

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.16: 18 residues within 4Å: Chain A: H.20, V.21, D.22, H.23, G.24, K.25, T.26, T.27, F.47, D.51, N.136, K.137, D.139, M.140, S.174, A.175, L.176 Ligands: MG.15 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:D.22, A:H.23, A:G.24, A:K.25, A:T.26, A:T.27, A:T.27, A:N.136, A:K.137, A:K.137, A:A.175, A:L.176 Water bridges: A:D.22, A:D.22, A:T.26, A:T.26, A:D.51, A:P.83, A:Y.88 Salt bridges: A:K.25, A:D.139

2 x NA: SODIUM ION(Non-functional Binders)

NA.17: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) NA.18: 1 residues within 4Å: Chain A: Y.332 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.332

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.19: 7 residues within 4Å: Chain A: E.118, L.121, E.308, N.356, I.357, K.358 Ligands: IOD.10 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.308, A:N.356 Water bridges: A:E.118, A:N.356

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garcia-Pino, A., Structure of phosphorylated EF-Tu in complex with GTP. To Be Published

Release Date

2018-08-29

Peptides

Elongation factor Tu 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Elongation factor Tu 1

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