SMTL ID : 5opd.2 (1 other biounit)

Structure of phosphorylated EF-Tu in complex with GTP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

14 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 3 residues within 4Å: Chain A: V.21, H.85, Q.115 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain A: P.345, K.358 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: E.349, M.350 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: S.198, Y.199 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: P.114, R.117 Ligand excluded by PLIP IOD.6: 3 residues within 4Å: Chain A: R.319, H.320, T.321 Ligand excluded by PLIP IOD.7: 2 residues within 4Å: Chain A: F.324, Y.327 Ligand excluded by PLIP IOD.8: 1 residues within 4Å: Chain A: F.262 Ligand excluded by PLIP IOD.9: 3 residues within 4Å: Chain A: A.97, Q.98, M.99 Ligand excluded by PLIP IOD.10: 2 residues within 4Å: Chain A: R.172, W.185 Ligand excluded by PLIP IOD.11: 3 residues within 4Å: Chain A: R.224, G.225, T.257 Ligand excluded by PLIP IOD.12: 3 residues within 4Å: Chain A: R.205, A.206, I.207 Ligand excluded by PLIP IOD.13: 4 residues within 4Å: Chain A: L.212, E.233, R.234, R.334 Ligand excluded by PLIP IOD.14: 3 residues within 4Å: Chain A: I.299, R.334, D.370 Ligand excluded by PLIP

1 x MG: MAGNESIUM ION(Non-covalent)

MG.15: 5 residues within 4Å: Chain A: K.25, T.26, C.82, P.83 Ligands: GTP.16 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.26

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.16: 19 residues within 4Å: Chain A: H.20, V.21, D.22, H.23, G.24, K.25, T.26, T.27, D.51, C.82, P.83, N.136, K.137, D.139, M.140, S.174, A.175, L.176 Ligands: MG.15 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:D.22, A:H.23, A:G.24, A:K.25, A:T.26, A:T.26, A:T.27, A:T.27, A:D.51, A:N.136, A:K.137, A:K.137, A:A.175, A:L.176 Water bridges: A:K.25, A:P.83 Salt bridges: A:K.25, A:K.25, A:D.139

3 x NA: SODIUM ION(Non-functional Binders)

NA.17: 2 residues within 4Å: Chain A: L.266, D.267 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.267 NA.18: 2 residues within 4Å: Chain A: E.118, L.121 No protein-ligand interaction detected (PLIP) NA.19: 4 residues within 4Å: Chain A: R.289, T.336, D.337, R.378 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.289, A:D.337, A:D.337, A:R.378

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garcia-Pino, A., Structure of phosphorylated EF-Tu in complex with GTP. To Be Published

Release Date

2018-08-29

Peptides

Elongation factor Tu 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Elongation factor Tu 1

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