SMTL ID : 5osi.2 (3 other biounits)

Structure of retromer VPS29-VPS35C subunits complexed with RidL harpin loop (163-176)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: R.60, G.61, D.62, E.71, H.88 Chain B: R.112 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.62, A:E.71, B:R.112, B:R.112 EDO.2: 3 residues within 4Å: Chain A: I.177, E.178, Y.179 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.179

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 1 residues within 4Å: Chain B: E.305 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.305, B:R.308

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Romano-Moreno, M. et al., Molecular mechanism for the subversion of the retromer coat by the Legionella effector RidL. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-12-13

Peptides

Vacuolar protein sorting-associated protein 29: A
Vacuolar protein sorting-associated protein 35: B
Interaptin: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Vacuolar protein sorting-associated protein 29

Vacuolar protein sorting-associated protein 35

Interaptin

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