SMTL ID : 5osi.4 (3 other biounits)

Structure of retromer VPS29-VPS35C subunits complexed with RidL harpin loop (163-176)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

hetero-1-1-mer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 1 residues within 4Å: Chain A: L.25 No protein-ligand interaction detected (PLIP) EDO.2: 2 residues within 4Å: Chain A: K.30, Y.165 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.165 EDO.3: 7 residues within 4Å: Chain A: D.62, F.63 Chain B: R.112, L.115, Q.116, L.160, T.164 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.164, B:T.164 EDO.4: 4 residues within 4Å: Chain B: I.102, S.142, D.146, E.147 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.146, B:D.146 Water bridges: B:Q.139 EDO.5: 2 residues within 4Å: Chain B: S.99, K.103 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.103

2 x NA: SODIUM ION(Non-functional Binders)

NA.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) NA.7: 1 residues within 4Å: Chain B: F.57 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Romano-Moreno, M. et al., Molecular mechanism for the subversion of the retromer coat by the Legionella effector RidL. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-12-13

Peptides

Vacuolar protein sorting-associated protein 29: A
Vacuolar protein sorting-associated protein 35: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
J

B
K

Vacuolar protein sorting-associated protein 29

Vacuolar protein sorting-associated protein 35

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