SMTL ID : 5ovj.1

Structure of the apo form of Mycobacterium smegmatis MabA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

14 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.102, T.110, R.113 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.110 Water bridges: A:T.110 Salt bridges: A:K.102, A:R.113 SO4.2: 6 residues within 4Å: Chain A: N.33, R.34, H.55, R.56, G.57, S.58 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.56, A:S.58, A:S.58, A:S.58 Water bridges: A:N.33 Salt bridges: A:R.34, A:R.56 SO4.3: 3 residues within 4Å: Chain A: T.110, E.111, E.112 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:E.111, B:S.74, B:S.74 SO4.4: 2 residues within 4Å: Chain A: R.19, P.20 2 PLIP interactions: 2 interactions with chain A Water bridges: A:F.22 Salt bridges: A:R.19 SO4.5: 6 residues within 4Å: Chain B: N.33, R.34, H.55, R.56, G.57, S.58 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:N.33, B:R.56, B:G.57, B:S.58, B:S.58, B:S.58 Salt bridges: B:R.34, B:R.56 SO4.6: 1 residues within 4Å: Chain B: R.79 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.79 SO4.7: 3 residues within 4Å: Chain B: T.110, E.112, R.113 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.110, B:E.112 Salt bridges: B:R.113 SO4.8: 3 residues within 4Å: Chain C: K.102, T.110, R.113 3 PLIP interactions: 3 interactions with chain C Water bridges: C:T.110 Salt bridges: C:K.102, C:R.113 SO4.9: 6 residues within 4Å: Chain C: N.33, R.34, H.55, R.56, G.57, S.58 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:R.56, C:S.58, C:S.58, C:S.58 Water bridges: C:N.33 Salt bridges: C:R.34, C:R.56 SO4.10: 3 residues within 4Å: Chain C: T.110, E.111, E.112 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:E.111, D:S.74, D:S.74 Water bridges: C:E.111, C:E.111 SO4.11: 2 residues within 4Å: Chain C: R.19, P.20 2 PLIP interactions: 2 interactions with chain C Water bridges: C:F.22 Salt bridges: C:R.19 SO4.12: 6 residues within 4Å: Chain D: N.33, R.34, H.55, R.56, G.57, S.58 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:N.33, D:R.56, D:G.57, D:S.58, D:S.58, D:S.58 Salt bridges: D:R.34, D:R.56 SO4.13: 1 residues within 4Å: Chain D: R.79 1 PLIP interactions: 1 interactions with chain D Salt bridges: D:R.79 SO4.14: 3 residues within 4Å: Chain D: T.110, E.112, R.113 1 PLIP interactions: 1 interactions with chain D Salt bridges: D:R.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kussau, T. et al., Structural rearrangements occurring upon cofactor binding in the Mycobacterium smegmatis beta-ketoacyl-acyl carrier protein reductase MabA. Acta Crystallogr D Struct Biol (2018)

Release Date

2018-02-28

Peptides

3-oxoacyl-[acyl-carrier-protein] reductase FabG: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

3-oxoacyl-[acyl-carrier-protein] reductase FabG

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