SMTL ID : 5ovk.1

Crystal structure MabA bound to NADPH from M. smegmatis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-tetramer

Ligands

4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 12 residues within 4Å: Chain A: G.31, N.33, R.34, R.56, C.69, D.70, V.71, T.72, A.98, G.99, I.100, T.120 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:G.31, A:N.33, A:R.34, A:S.58, A:D.70, A:V.71, A:G.99 Water bridges: A:G.31, A:G.31, A:I.36, A:I.36, A:I.36, A:R.56, A:R.56, A:R.56, A:R.56, A:S.58 Salt bridges: A:R.34, A:R.56 pi-Cation interactions: A:R.56 NDP.2: 25 residues within 4Å: Chain B: G.31, N.33, R.34, G.35, I.36, R.56, C.69, D.70, V.71, T.72, N.97, A.98, G.99, I.100, T.120, I.147, G.148, S.149, Y.162, K.166, P.192, G.193, Y.194, I.195, T.197 30 PLIP interactions: 30 interactions with chain B Hydrophobic interactions: B:I.36, B:P.192 Hydrogen bonds: B:G.31, B:N.33, B:I.36, B:D.70, B:V.71, B:N.97, B:G.99, B:K.166, B:G.193, B:I.195, B:T.197 Water bridges: B:G.31, B:G.37, B:G.37, B:R.56, B:R.56, B:R.56, B:R.56, B:I.100, B:S.101, B:S.101, B:T.120, B:Y.162 Salt bridges: B:R.34, B:R.34, B:R.56 pi-Cation interactions: B:R.56, B:R.56 NDP.3: 14 residues within 4Å: Chain C: G.31, N.33, R.34, G.35, I.36, R.56, C.69, D.70, V.71, T.72, A.98, G.99, I.100, T.120 17 PLIP interactions: 17 interactions with chain C Hydrogen bonds: C:G.31, C:N.33, C:N.33, C:I.36, C:D.70, C:V.71, C:N.97, C:G.99 Water bridges: C:G.37, C:R.56, C:R.56, C:N.97 Salt bridges: C:R.34, C:R.34, C:R.56 pi-Cation interactions: C:R.56, C:R.56 NDP.4: 14 residues within 4Å: Chain D: G.31, N.33, R.34, H.55, R.56, C.69, D.70, V.71, T.72, A.98, G.99, I.100, T.120, E.198 18 PLIP interactions: 18 interactions with chain D Hydrogen bonds: D:G.31, D:N.33, D:N.33, D:R.56, D:R.56, D:D.70, D:V.71, D:G.99, D:E.198 Water bridges: D:G.31, D:G.31, D:R.34, D:R.34, D:I.36, D:T.120 Salt bridges: D:R.34, D:R.56 pi-Cation interactions: D:R.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kussau, T. et al., Structural rearrangements occurring upon cofactor binding in the Mycobacterium smegmatis beta-ketoacyl-acyl carrier protein reductase MabA. Acta Crystallogr D Struct Biol (2018)

Release Date

2018-02-28

Peptides

3-oxoacyl-[acyl-carrier-protein] reductase FabG: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

3-oxoacyl-[acyl-carrier-protein] reductase FabG

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