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SMTL ID : 5q1s.1

PanDDA analysis group deposition -- Crystal Structure of DCLRE1A in complex with BDOOA011525c

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.1:

8 residues within 4Å:

Chain A: H.35, H.37, D.39, H.40, H.96, D.118, H.297
Ligands: NI.2

8 PLIP interactions:

8 interactions with chain A

Water bridges: A:D.39, A:D.39
Salt bridges: A:H.35, A:H.37, A:H.37, A:H.40, A:H.96, A:H.297

1 x NI: NICKEL (II) ION(Non-covalent)

NI.2:

5 residues within 4Å:

Chain A: H.35, H.37, H.96, D.118
Ligands: MLI.1

4 PLIP interactions:

4 interactions with chain A

Metal complexes: A:H.35, A:H.37, A:H.96, A:D.118

1 x AWY: ~{N}-[2-(7-methoxynaphthalen-1-yl)ethyl]ethanamide(Covalent)

AWY.3:

9 residues within 4Å:

Chain A: K.134, V.307, K.311, P.312, Q.313, I.315, F.334, K.338, Y.343

12 PLIP interactions:

12 interactions with chain A

Hydrophobic interactions: A:V.307, A:K.311, A:I.315, A:Y.343, A:Y.343, A:Y.343, A:Y.343
Hydrogen bonds: A:K.311, A:Y.343
Water bridges: A:K.134, A:K.134, A:Q.313

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Newman, J.A. et al., PanDDA analysis group deposition. To Be Published

Release Date

2018-08-08

Peptides

DNA cross-link repair 1A protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

DNA cross-link repair 1A protein

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5nzw.1 | 5nzx.1 | 5nzy.1 | 5q1j.1 | 5q1k.1 | 5q1l.1 | 5q1m.1 | 5q1n.1 | 5q1o.1 | 5q1p.1 | 5q1q.1 | 5q1r.1 | 5q1t.1 | 5q1u.1 | 5q1v.1 | 5q1w.1 | 5q1x.1 | 5q1y.1 | 5q1z.1 | 5q20.1 | 5q22.1 | 5q23.1 | 5q24.1 | 5q25.1 | 5q26.1 | 5q27.1 | 5q28.1 | 5q29.1 | 5q2a.1 | 5q2b.1 more...less...

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