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SMTL ID : 5q1u.1

PanDDA analysis group deposition -- Crystal Structure of DCLRE1A in complex with FMOPL000351a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.1:

8 residues within 4Å:

Chain A: H.35, H.37, D.39, H.40, H.96, D.118, H.297
Ligands: NI.2

7 PLIP interactions:

7 interactions with chain A

Water bridges: A:D.39
Salt bridges: A:H.35, A:H.37, A:H.37, A:H.40, A:H.96, A:H.297

1 x NI: NICKEL (II) ION(Non-covalent)

NI.2:

5 residues within 4Å:

Chain A: H.35, H.37, H.96, D.118
Ligands: MLI.1

4 PLIP interactions:

4 interactions with chain A

Metal complexes: A:H.35, A:H.37, A:H.96, A:D.118

1 x AXJ: [(2~{R})-1-[[(1~{R},5~{S})-6,6-dimethyl-2-bicyclo[3.1.1]hept-2-enyl]methyl]pyrrolidin-2-yl]methanol(Non-covalent)

AXJ.3:

8 residues within 4Å:

Chain A: T.143, C.145, S.146, E.148, Y.149, N.320, S.326, M.330

1 PLIP interactions:

1 interactions with chain A

Salt bridges: A:E.148

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Newman, J.A. et al., PanDDA analysis group deposition. To Be Published

Release Date

2018-08-08

Peptides

DNA cross-link repair 1A protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

DNA cross-link repair 1A protein

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