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SMTL ID : 5q1v.1

PanDDA analysis group deposition -- Crystal Structure of DCLRE1A in complex with FMOPL000166a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

monomer

Ligands

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.1:

8 residues within 4Å:

Chain A: H.35, H.37, D.39, H.40, H.96, D.118, H.297
Ligands: NI.2

8 PLIP interactions:

8 interactions with chain A

Water bridges: A:D.39, A:D.39
Salt bridges: A:H.35, A:H.37, A:H.37, A:H.40, A:H.96, A:H.297

1 x NI: NICKEL (II) ION(Non-covalent)

NI.2:

5 residues within 4Å:

Chain A: H.35, H.37, H.96, D.118
Ligands: MLI.1

4 PLIP interactions:

4 interactions with chain A

Metal complexes: A:H.35, A:H.37, A:H.96, A:D.118

1 x AXS: 1-(4-fluorophenyl)-~{N}-[[(2~{R})-oxolan-2-yl]methyl]methanamine(Covalent)

AXS.3:

7 residues within 4Å:

Chain A: T.142, T.143, C.145, E.148, Y.149, W.267, N.320

5 PLIP interactions:

5 interactions with chain A

Hydrophobic interactions: A:Y.149, A:Y.149, A:W.267
Hydrogen bonds: A:E.148, A:Y.149

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Newman, J.A. et al., PanDDA analysis group deposition. To Be Published

Release Date

2018-08-08

Peptides

DNA cross-link repair 1A protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

DNA cross-link repair 1A protein

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5nzw.1 | 5nzx.1 | 5nzy.1 | 5q1j.1 | 5q1k.1 | 5q1l.1 | 5q1m.1 | 5q1n.1 | 5q1o.1 | 5q1p.1 | 5q1q.1 | 5q1r.1 | 5q1s.1 | 5q1t.1 | 5q1u.1 | 5q1w.1 | 5q1x.1 | 5q1y.1 | 5q1z.1 | 5q20.1 | 5q22.1 | 5q23.1 | 5q24.1 | 5q25.1 | 5q26.1 | 5q27.1 | 5q28.1 | 5q29.1 | 5q2a.1 | 5q2b.1 more...less...

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