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SMTL ID : 5q1x.1

PanDDA analysis group deposition -- Crystal Structure of DCLRE1A in complex with FMOPL000085a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.1:

8 residues within 4Å:

Chain A: H.35, H.37, D.39, H.40, H.96, D.118, H.297
Ligands: NI.2

7 PLIP interactions:

7 interactions with chain A

Water bridges: A:D.39
Salt bridges: A:H.35, A:H.37, A:H.37, A:H.40, A:H.96, A:H.297

1 x NI: NICKEL (II) ION(Non-covalent)

NI.2:

5 residues within 4Å:

Chain A: H.35, H.37, H.96, D.118
Ligands: MLI.1

4 PLIP interactions:

4 interactions with chain A

Metal complexes: A:H.35, A:H.37, A:H.96, A:D.118

3 x AY4: 2,4-bis(fluoranyl)-6-(1~{H}-pyrazol-3-yl)phenol(Non-covalent)(Covalent)

AY4.3:	7 residues within 4Å: Chain A: P.98, E.187, K.188, L.191, N.215, I.216, P.217 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.191, A:I.216, A:I.216 Hydrogen bonds: A:N.215
AY4.4:	11 residues within 4Å: Chain A: V.307, Q.308, K.311, P.312, Q.313, K.314, I.315, F.334, W.337, K.338, Y.343 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.315, A:F.334, A:K.338, A:K.338, A:Y.343, A:Y.343 Hydrogen bonds: A:Q.313 Water bridges: A:I.315
AY4.5:	3 residues within 4Å: Chain A: W.324, K.325, S.328 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.325 Hydrogen bonds: A:S.328 Water bridges: A:K.325

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Newman, J.A. et al., PanDDA analysis group deposition. To Be Published

Release Date

2018-08-08

Peptides

DNA cross-link repair 1A protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

DNA cross-link repair 1A protein

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