SMTL ID : 5qgk.1

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of NUDT7 in complex with FMOPL000679a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 4 residues within 4Å: Chain A: G.56, V.58, Y.173, Q.174 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.174

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 7 residues within 4Å: Chain A: G.85, R.87, Q.90, N.118, F.119, Q.120, Q.122 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.120

3 x H0S: N-(4-methylphenyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine(Non-covalent)

H0S.3: 10 residues within 4Å: Chain A: Y.27, V.29, C.59, F.60, G.62, G.63, T.106, I.108, M.178 Ligands: H0S.4 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:T.106 Hydrogen bonds: A:F.60 Water bridges: A:R.47, A:R.47, A:F.60 pi-Stacking: A:Y.27 pi-Cation interactions: A:R.47 H0S.4: 6 residues within 4Å: Chain A: Y.27, R.47, R.53, A.54, C.59 Ligands: H0S.3 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:R.53, A:A.54 Hydrogen bonds: A:Y.27, A:R.53 pi-Cation interactions: A:R.53, A:R.53 H0S.5: 10 residues within 4Å: Chain A: L.3, D.4, K.7, H.89, Q.90, V.91, E.92, L.114, I.115, D.116 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:E.92, A:L.114, A:L.114, A:D.116 Hydrogen bonds: A:D.4, A:E.92, A:E.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krojer, T. et al., PanDDA analysis group deposition of models with modelled events (e.g. bound ligands). To Be Published

Release Date

2019-03-27

Peptides

Peroxisomal coenzyme A diphosphatase NUDT7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisomal coenzyme A diphosphatase NUDT7

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