SMTL ID : 5qgo.1

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of NUDT7 in complex with OX-220

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

monomer

Ligands

1 x H4A: (3aR,4R,6R,7R,8aR)-6-phenyloctahydro-1H-3a,7-epiminocyclohepta[c]pyrrol-4-ol(Non-covalent)

H4A.1: 8 residues within 4Å: Chain A: Y.27, R.53, C.59, I.102, D.103, I.108, M.178, T.179 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.102, A:I.108 Water bridges: A:F.60, A:T.179 pi-Stacking: A:Y.27

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 5 residues within 4Å: Chain A: V.46, G.56, V.58, Y.173, Q.174 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.174 ACT.3: 4 residues within 4Å: Chain A: P.88, H.89, V.91, E.92 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:E.92

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 7 residues within 4Å: Chain A: G.85, R.87, Q.90, N.118, F.119, Q.120, Q.122 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.120 DMS.5: 2 residues within 4Å: Chain A: D.116, H.117 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.117 Salt bridges: A:D.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krojer, T. et al., PanDDA analysis group deposition of models with modelled events (e.g. bound ligands). To Be Published

Release Date

2019-03-27

Peptides

Peroxisomal coenzyme A diphosphatase NUDT7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisomal coenzyme A diphosphatase NUDT7

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