SMTL ID : 5qhm.1

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of human FAM83B in complex with OX-145

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: I.7, D.8, L.9 Chain B: S.154 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.9 Water bridges: A:L.9 EDO.2: 5 residues within 4Å: Chain A: T.24, K.27, M.28, K.124, I.146 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.124 Water bridges: A:E.31 EDO.4: 4 residues within 4Å: Chain A: S.154 Chain B: I.7, D.8, L.9 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.9 Water bridges: B:L.9 EDO.5: 5 residues within 4Å: Chain B: T.24, K.27, M.28, K.124, I.146 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.124

2 x GQA: 1-methyl-3-oxidanyl-pyridine-2-thione(Non-covalent)

GQA.3: 9 residues within 4Å: Chain A: K.116, Y.127, G.128, S.129 Chain B: K.116, Y.127, G.128, S.129 Ligands: GQA.6 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.127, B:Y.127 Hydrogen bonds: A:K.116, A:K.116 GQA.6: 9 residues within 4Å: Chain A: K.116, Y.127, G.128, S.129 Chain B: K.116, Y.127, G.128, S.129 Ligands: GQA.3 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:Y.127, B:Y.127 Hydrogen bonds: B:K.116, B:K.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pinkas, D.M. et al., PanDDA analysis group deposition of models with modelled events (e.g. bound ligands). To Be Published

Release Date

2018-12-19

Peptides

Protein FAM83B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein FAM83B

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