SMTL ID : 5qhp.1

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of human FAM83B in complex with FMOPL000554a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: I.7, D.8, L.9 Chain B: L.151, S.154 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.9 EDO.2: 4 residues within 4Å: Chain A: T.24, K.27, K.124, I.146 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.27, A:K.124 EDO.4: 5 residues within 4Å: Chain A: L.151, S.154 Chain B: I.7, D.8, L.9 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.9 EDO.5: 4 residues within 4Å: Chain B: T.24, K.27, K.124, I.146 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.27, B:K.124

2 x GQM: 5-methoxy-2-(1~{H}-pyrazol-3-yl)phenol(Non-covalent)

GQM.3: 12 residues within 4Å: Chain A: V.35, I.36, A.37, Y.63, L.119, V.120, D.121, C.122, D.156, F.159, R.160, Y.163 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.35, A:L.119, A:R.160 Hydrogen bonds: A:D.121 pi-Stacking: A:Y.63, A:F.159 GQM.6: 12 residues within 4Å: Chain B: V.35, I.36, A.37, Y.63, L.119, V.120, D.121, C.122, D.156, F.159, R.160, Y.163 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:V.35, B:L.119, B:R.160 Hydrogen bonds: B:D.121, B:D.156 pi-Stacking: B:Y.63, B:F.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pinkas, D.M. et al., PanDDA analysis group deposition of models with modelled events (e.g. bound ligands). To Be Published

Release Date

2018-12-19

Peptides

Protein FAM83B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein FAM83B

Related Entries With Identical Sequence