SMTL ID : 5qol.1

PanDDA analysis group deposition -- Crystal Structure of DCP2 (NUDT20) in complex with FMOPL000435a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: A.49, R.50, F.53, D.59, K.61 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.49 EDO.2: 4 residues within 4Å: Chain A: P.129, N.130, K.131 Ligands: ACT.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.131

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 4 residues within 4Å: Chain A: N.18, W.106, F.107, S.108 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.108

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 1 residues within 4Å: Chain A: S.29 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.29 Water bridges: A:L.26, A:L.26 ACT.5: 5 residues within 4Å: Chain A: R.116, P.129, N.130, F.133 Ligands: EDO.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.130 Salt bridges: A:R.116

1 x JGP: (azepan-1-yl)(2H-1,3-benzodioxol-5-yl)methanone(Non-covalent)

JGP.6: 8 residues within 4Å: Chain A: V.22, G.24, K.28, F.33, K.35, G.36, E.55, Q.77 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.22, A:K.28 pi-Cation interactions: A:K.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nelson, E.R. et al., PanDDA analysis group deposition. To Be Published

Release Date

2019-05-08

Peptides

DCP2 (NUDT20): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DCP2 (NUDT20)

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