SMTL ID : 5qov.1

PanDDA analysis group deposition -- Crystal Structure of DCP2 (NUDT20) in complex with Z1699011516

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: A.49, R.50, F.53, D.59, K.61 No protein-ligand interaction detected (PLIP) EDO.2: 4 residues within 4Å: Chain A: P.129, N.130, K.131 Ligands: ACT.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.131

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 4 residues within 4Å: Chain A: N.18, W.106, F.107, S.108 No protein-ligand interaction detected (PLIP)

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 1 residues within 4Å: Chain A: S.29 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.29 ACT.5: 5 residues within 4Å: Chain A: R.116, P.129, N.130, F.133 Ligands: EDO.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.133 Hydrogen bonds: A:N.130 Salt bridges: A:R.116

1 x LE4: [2-(cycloheptylamino)pyrimidin-4-yl]methanol(Non-covalent)

LE4.6: 11 residues within 4Å: Chain A: V.22, G.24, K.28, G.32, F.33, K.35, E.55, I.101, M.134, A.135, F.138 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.22, A:K.28, A:I.101, A:M.134 Hydrogen bonds: A:F.33 pi-Cation interactions: A:K.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nelson, E.R. et al., PanDDA analysis group deposition. To Be Published

Release Date

2019-05-08

Peptides

DCP2 (NUDT20): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DCP2 (NUDT20)

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