SMTL ID : 5qp0.1

PanDDA analysis group deposition -- Crystal Structure of DCP2 (NUDT20) in complex with Z454376544

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: A.49, F.53, D.59, K.61 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.59 Water bridges: A:R.50 EDO.2: 4 residues within 4Å: Chain A: P.129, N.130, K.131 Ligands: ACT.5 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.131

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 3 residues within 4Å: Chain A: N.18, K.89, W.106 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.108

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 3 residues within 4Å: Chain A: L.26, S.29, R.102 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.29, A:R.102 Water bridges: A:L.26 ACT.5: 5 residues within 4Å: Chain A: R.116, P.129, N.130, F.133 Ligands: EDO.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.130 Salt bridges: A:R.116

1 x LF4: N-[(4-fluorophenyl)methyl]-3-(propan-2-yl)-1H-pyrazole-5-carboxamide(Non-covalent)

LF4.6: 12 residues within 4Å: Chain A: V.22, G.24, A.27, K.28, S.29, G.30, G.32, F.33, E.55, I.101, F.133, M.134 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.22, A:K.28, A:I.101, A:F.133 Hydrogen bonds: A:G.30, A:G.30, A:G.30 Water bridges: A:W.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nelson, E.R. et al., PanDDA analysis group deposition. To Be Published

Release Date

2019-05-08

Peptides

DCP2 (NUDT20): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DCP2 (NUDT20)

Related Entries With Identical Sequence