SMTL ID : 5qr2.1

PanDDA analysis group deposition -- Crystal Structure of human ALAS2A in complex with Z1348371854

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PLP.1: 17 residues within 4Å: Chain A: S.139, C.140, F.141, N.144, H.167, S.169, E.210, S.214, D.239, V.241, H.242, T.270, K.273, G.279 Chain B: F.301, T.302, T.303 17 PLIP interactions: 12 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:H.167, A:E.210, A:V.241 Hydrogen bonds: A:C.140, A:F.141, A:N.144, A:S.214, A:S.214, A:T.270, A:K.273, B:T.302, B:T.303 Salt bridges: A:K.273 pi-Stacking: A:H.167 Water bridges: B:S.138, B:T.303, B:T.303 PLP.2: 17 residues within 4Å: Chain A: F.301, T.302, T.303 Chain B: S.139, C.140, F.141, N.144, H.167, S.169, E.210, S.214, D.239, V.241, H.242, T.270, K.273, G.279 17 PLIP interactions: 13 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:H.167, B:V.241 Hydrogen bonds: B:C.140, B:F.141, B:N.144, B:S.169, B:S.214, B:S.214, B:T.270, B:K.273, B:G.279, A:T.303 Water bridges: B:N.79, A:S.138, A:T.303, A:T.303 pi-Stacking: B:H.167

1 x NTG: 5-(1,4-oxazepan-4-yl)pyridine-2-carbonitrile(Non-covalent)

NTG.3: 3 residues within 4Å: Chain B: P.88, Q.89, Q.92 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:Q.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bezerra, G.A. et al., PanDDA analysis group deposition. To Be Published

Release Date

2019-08-07

Peptides

5-aminolevulinate synthase, erythroid-specific, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

5-aminolevulinate synthase, erythroid-specific, mitochondrial

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