SMTL ID : 5qrg.1

PanDDA analysis group deposition -- Crystal Structure of human Brachyury in complex with Z275151340

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

5 x CD: CADMIUM ION(Non-covalent)

CD.1: 3 residues within 4Å: Chain A: E.128, C.147 Ligands: CD.2 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.128, A:C.147, H2O.3 CD.2: 3 residues within 4Å: Chain A: E.128, Q.152 Ligands: CD.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.128, A:E.128, H2O.3 CD.3: 2 residues within 4Å: Chain A: C.83 Ligands: CD.5 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:C.83, H2O.2, H2O.3, H2O.3 CD.4: 1 residues within 4Å: Chain A: H.61 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.61, H2O.3, H2O.3, H2O.3 CD.5: 2 residues within 4Å: Chain A: C.83 Ligands: CD.3 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:C.83, H2O.2, H2O.3, H2O.3

1 x JHP: 4-chloro-N-cyclopentyl-1-methyl-1H-pyrazole-3-carboxamide(Non-covalent)

JHP.6: 7 residues within 4Å: Chain A: S.50, L.52, I.86, S.90, P.91, V.134, V.136 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.52, A:V.134, A:V.136 Hydrogen bonds: A:S.50 Halogen bonds: A:S.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Newman, J.A. et al., PanDDA analysis group deposition. To Be Published

Release Date

2019-07-10

Peptides

T-box transcription factor T: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

T-box transcription factor T

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