SMTL ID : 5qrw.1

PanDDA analysis group deposition -- Crystal Structure of human Brachyury in complex with Z1509882419

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

4 x CD: CADMIUM ION(Non-covalent)

CD.1: 3 residues within 4Å: Chain A: E.128, C.147 Ligands: CD.2 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.128, A:C.147, H2O.3 CD.2: 3 residues within 4Å: Chain A: E.128, Q.152 Ligands: CD.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.128, A:E.128, H2O.3 CD.3: 2 residues within 4Å: Chain A: C.83 Ligands: NYV.5 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:C.83, H2O.2, H2O.3 CD.4: 1 residues within 4Å: Chain A: H.61 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.61, H2O.3, H2O.3, H2O.3

2 x NYV: 1-(propan-2-yl)-1H-imidazole-4-sulfonamide(Non-covalent)

NYV.5: 8 residues within 4Å: Chain A: A.80, P.81, S.82, C.83, M.120, N.122, Y.127 Ligands: CD.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.83 NYV.6: 7 residues within 4Å: Chain A: R.62, S.123, L.124, V.156, T.157, A.158, Q.160 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.123, A:T.157, A:T.157, A:A.158, A:Q.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Newman, J.A. et al., PanDDA analysis group deposition. To Be Published

Release Date

2019-07-10

Peptides

T-box transcription factor T: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

T-box transcription factor T

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