- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.05 Å
- Oligo State
- monomer
- Ligands
- 1 x QNF: (1R,2R)-4-hydroxy-1-[(3-oxo-3,4-dihydro-2H-1,4-benzoxazine-7-carbonyl)amino]-2,3-dihydro-1H-indene-2-carboxylic acid(Non-covalent)
QNF.1: 22 residues within 4Å:- Chain A: D.22, I.23, V.24, A.38, G.48, V.49, A.52, P.125, L.126, L.127, S.128, A.129, G.130, I.131, F.132, A.154, V.155, F.156, D.157, L.160
- Ligands: QNV.2, QNV.3
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:A.38, A:V.49, A:V.49, A:A.129, A:I.131, A:F.132, A:F.156
- Hydrogen bonds: A:D.22, A:S.128, A:A.129, A:A.129, A:F.156, A:D.157
- pi-Stacking: A:F.156
- 2 x QNV: (1S,2S)-4-hydroxy-1-[(3-oxo-3,4-dihydro-2H-1,4-benzoxazine-7-carbonyl)amino]-2,3-dihydro-1H-indene-2-carboxylic acid(Non-covalent)
QNV.2: 19 residues within 4Å:- Chain A: D.22, I.23, V.24, G.48, V.49, A.52, P.125, L.126, A.129, G.130, I.131, P.136, A.154, V.155, F.156, D.157, L.160
- Ligands: QNF.1, QNV.3
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:V.49, A:A.129, A:F.156, A:L.160
- Hydrogen bonds: A:D.22, A:L.126, A:G.130, A:F.156
- Water bridges: A:D.157
- pi-Stacking: A:F.156
QNV.3: 16 residues within 4Å:- Chain A: D.22, I.23, V.24, G.48, V.49, A.52, P.125, A.129, G.130, I.131, V.155, F.156, D.157, L.160
- Ligands: QNF.1, QNV.2
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:V.49, A:A.129, A:F.156
- Hydrogen bonds: A:D.22, A:F.156
- Water bridges: A:G.130, A:D.157
- pi-Stacking: A:F.156
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gahbauer, S. et al., Iterative computational design and crystallographic screening identifies potent inhibitors targeting the Nsp3 macrodomain of SARS-CoV-2. Proc.Natl.Acad.Sci.USA (2023)
- Release Date
- 2022-07-06
- Peptides
- Non-structural protein 3: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
SMTL ID : 5sqa.1 (1 other biounit)
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with Z5010894395 - (R,R) and (S,S) isomers
Non-structural protein 3
Related Entries With Identical Sequence
5rs7.1 | 5rs7.2 | 5rs8.1 | 5rs8.2 | 5rs9.1 | 5rs9.2 | 5rsb.1 | 5rsb.2 | 5rsc.1 | 5rsc.2 | 5rsd.1 | 5rsd.2 | 5rse.1 | 5rse.2 | 5rsf.1 | 5rsf.2 | 5rsg.1 | 5rsg.2 | 5rsh.1 | 5rsh.2 | 5rsi.1 | 5rsi.2 | 5rsj.1 | 5rsj.2 | 5rsk.1 | 5rsk.2 | 5rsl.1 | 5rsl.2 | 5rsm.1 | 5rsm.2 more...less...5rsn.1 | 5rsn.2 | 5rso.1 | 5rso.2 | 5rsp.1 | 5rsp.2 | 5rsq.1 | 5rsq.2 | 5rsr.1 | 5rsr.2 | 5rss.1 | 5rss.2 | 5rst.1 | 5rst.2 | 5rsu.1 | 5rsu.2 | 5rsv.1 | 5rsv.2 | 5rsw.1 | 5rsw.2 | 5rsx.1 | 5rsx.2 | 5rsy.1 | 5rsy.2 | 5rsz.1 | 5rsz.2 | 5rt0.1 | 5rt0.2 | 5rt1.1 | 5rt1.2 | 5rt2.1 | 5rt2.2 | 5rt3.1 | 5rt3.2 | 5rt4.1 | 5rt4.2 | 5rt5.1 | 5rt5.2 | 5rt6.1 | 5rt6.2 | 5rt7.1 | 5rt7.2 | 5rt8.1 | 5rt8.2 | 5rt9.1 | 5rt9.2 | 5rta.1 | 5rta.2 | 5rtb.1 | 5rtb.2 | 5rtc.1 | 5rtc.2 | 5rtd.1 | 5rtd.2 | 5rte.1 | 5rte.2 | 5rtf.1 | 5rtf.2 | 5rtg.1 | 5rtg.2 | 5rth.1 | 5rth.2 | 5rti.1 | 5rti.2 | 5rtj.1 | 5rtj.2 | 5rtk.1 | 5rtk.2 | 5rtl.1 | 5rtl.2 | 5rtm.1 | 5rtm.2 | 5rtn.1 | 5rtn.2 | 5rto.1 | 5rto.2 | 5rtp.1 | 5rtp.2 | 5rtq.1 | 5rtq.2 | 5rtr.1 | 5rtr.2 | 5rts.1 | 5rts.2 | 5rtt.1 | 5rtt.2 | 5rtu.1 | 5rtu.2 | 5rtv.1 | 5rtv.2 | 5rtw.1 | 5rtw.2 | 5rtx.1 | 5rtx.2 | 5rty.1 | 5rty.2 | 5rtz.1 | 5rtz.2 | 5ru0.1 | 5ru0.2 | 5ru1.1 | 5ru1.2 | 5ru2.1 | 5ru2.2 | 5ru3.1 | 5ru3.2 | 5ru4.1 | 5ru4.2 | 5ru5.1 | 5ru5.2 | 5ru6.1 | 5ru6.2 | 5ru7.1 | 5ru7.2 | 5ru8.1 | 5ru8.2 | 5ru9.1 | 5ru9.2 | 5rua.1 | 5rua.2 | 5ruc.1 | 5ruc.2 | 5rud.1 | 5rud.2 | 5rue.1 | 5rue.2 | 5ruf.1 | 5ruf.2 | 5rug.1 | 5rug.2 | 5ruh.1 | 5ruh.2 | 5rui.1 | 5rui.2 | 5ruj.1 | 5ruj.2 | 5ruk.1 | 5ruk.2 | 5rul.1 | 5rul.2 | 5rum.1 | 5rum.2 | 5run.1 | 5run.2 | 5ruo.1 | 5ruo.2 | 5rup.1 | 5rup.2 | 5ruq.1 | 5ruq.2 | 5rur.1 | 5rur.2 | 5rus.1 | 5rus.2 | 5rut.1 | 5rut.2 | 5ruu.1 | 5ruu.2 | 5ruv.1 | 5ruv.2 | 5ruw.1 | 5ruw.2 | 5rux.1 | 5rux.2 | 5ruy.1 | 5ruy.2 | 5ruz.1 | 5ruz.2 | 5rv0.1 | 5rv0.2 | 5rv1.1 | 5rv1.2 | 5rv2.1 | 5rv2.2 | 5rv3.1 | 5rv3.2 | 5rv4.1 | 5rv4.2 | 5rv5.1 | 5rv5.2 | 5rv6.1 | 5rv6.2 | 5rv7.1 | 5rv7.2 | 5rv8.1 | 5rv8.2 | 5rv9.1 | 5rv9.2 | 5rva.1 | 5rva.2 | 5rvb.1 | 5rvb.2 | 5rvc.1 | 5rvc.2 | 5rvd.1 | 5rvd.2 | 5rve.1 | 5rve.2 | 5rvf.1 | 5rvf.2 | 5rvg.1 | 5rvg.2 | 5rvh.1 | 5rvh.2 | 5rvi.1 | 5rvi.2 | 5s18.1 | 5s18.2 | 5s1a.1 | 5s1a.2 | 5s1c.1 | 5s1c.2 | 5s1e.1 | 5s1e.2 | 5s1g.1 | 5s1g.2 | 5s1i.1 | 5s1i.2 | 5s1k.1 | 5s1k.2 | 5s1m.1 | 5s1m.2 | 5s1o.1 | 5s1o.2 | 5s1q.1 | 5s1q.2 | 5s1s.1 | 5s1s.2 | 5s1u.1 | 5s1u.2 | 5s1w.1 | 5s1w.2 | 5s1y.1 | 5s1y.2 | 5s20.1 | 5s20.2 | 5s22.1 | 5s22.2 | 5s24.1 | 5s24.2 | 5s26.1 | 5s26.2 | 5s27.1 | 5s27.2 | 5s28.1 | 5s28.2 | 5s29.1 | 5s29.2 | 5s2a.1 | 5s2a.2 | 5s2b.1 | 5s2b.2 | 5s2c.1 | 5s2c.2 | 5s2d.1 | 5s2d.2 | 5s2e.1 | 5s2e.2 | 5s2f.1 | 5s2f.2 | 5s2g.1 | 5s2g.2 | 5s2h.1 | 5s2h.2 | 5s2i.1 | 5s2i.2 | 5s2j.1 | 5s2j.2 | 5s2k.1 | 5s2k.2 | 5s2l.1 | 5s2l.2 | 5s2m.1 | 5s2m.2 | 5s2n.1 | 5s2n.2 | 5s2o.1 | 5s2o.2 | 5s2p.1 | 5s2p.2 | 5s2q.1 | 5s2q.2 | 5s2r.1 | 5s2r.2 | 5s2s.1 | 5s2s.2 | 5s2t.1 | 5s2t.2 | 5s2u.1 | 5s2u.2 | 5s2v.1 | 5s2v.2 | 5s2w.1 | 5s2w.2 | 5s2x.1 | 5s2x.2 | 5s2y.1 | 5s2y.2 | 5s2z.1 | 5s2z.2 | 5s30.1 | 5s30.2 | 5s31.1 | 5s31.2 | 5s32.1 | 5s32.2 | 5s33.1 | 5s33.2 | 5s34.1 | 5s34.2 | 5s35.1 | 5s35.2 | 5s36.1 | 5s36.2 | 5s37.1 | 5s37.2 | 5s38.1 | 5s38.2 | 5s39.1 | 5s39.2 | 5s3a.1 | 5s3a.2 | 5s3b.1 | 5s3b.2 | 5s3c.1 | 5s3c.2 | 5s3d.1 | 5s3d.2 | 5s3e.1 | 5s3e.2 | 5s3f.1 | 5s3f.2 | 5s3g.1 | 5s3g.2 | 5s3h.1 | 5s3h.2 | 5s3i.1 | 5s3i.2 | 5s3j.1 | 5s3j.2 | 5s3k.1 | 5s3k.2 | 5s3l.1 | 5s3l.2 | 5s3m.1 | 5s3m.2 | 5s3n.1 | 5s3n.2 | 5s3o.1 | 5s3o.2 | 5s3p.1 | 5s3p.2 | 5s3q.1 | 5s3q.2 | 5s3r.1 | 5s3r.2 | 5s3s.1 | 5s3s.2 | 5s3t.1 | 5s3t.2 | 5s3u.1 | 5s3u.2 | 5s3v.1 | 5s3v.2 | 5s3w.1 | 5s3w.2 | 5s3x.1 | 5s3x.2 | 5s3y.1 | 5s3y.2 | 5s3z.1 | 5s3z.2 | 5s40.1 | 5s40.2 | 5s41.1 | 5s41.2 | 5s42.1 | 5s42.2 | 5s43.1 | 5s43.2 | 5s44.1 | 5s44.2 | 5s45.1 | 5s45.2 | 5s46.1 | 5s46.2 | 5s47.1 | 5s47.2 | 5s48.1 | 5s48.2 | 5s49.1 | 5s49.2 | 5s4a.1 | 5s4a.2 | 5s4b.1 | 5s4b.2 | 5s4c.1 | 5s4c.2 | 5s4d.1 | 5s4d.2 | 5s4e.1 | 5s4e.2 | 5s4f.1 | 5s4f.2 | 5s4g.1 | 5s4g.2 | 5s4h.1 | 5s4h.2 | 5s4i.1 | 5s4i.2 | 5s4j.1 | 5s4j.2 | 5s4k.1 | 5s4k.2 | 5s73.1 | 5s73.2 | 5s74.1 | 5s74.2 | 5soi.1 | 5soi.2 | 5soj.1 | 5soj.2 | 5sok.1 | 5sok.2 | 5sol.1 | 5sol.2 | 5som.1 | 5som.2 | 5son.1 | 5son.2 | 5soo.1 | 5soo.2 | 5sop.1 | 5sop.2 | 5soq.1 | 5soq.2 | 5sor.1 | 5sor.2 | 5sos.1 | 5sos.2 | 5sot.1 | 5sot.2 | 5sou.1 | 5sou.2 | 5sov.1 | 5sov.2 | 5sow.1 | 5sow.2 | 5sox.1 | 5sox.2 | 5soy.1 | 5soy.2 | 5soz.1 | 5soz.2 | 5sp0.1 | 5sp0.2 | 5sp1.1 | 5sp1.2 | 5sp2.1 | 5sp2.2 | 5sp3.1 | 5sp3.2 | 5sp4.1 | 5sp4.2 | 5sp6.1 | 5sp6.2 | 5sp7.1 | 5sp7.2 | 5sp8.1 | 5sp8.2 | 5sp9.1 | 5sp9.2 | 5spa.1 | 5spa.2 | 5spb.1 | 5spb.2 | 5spc.1 | 5spc.2 | 5spd.1 | 5spd.2 | 5spe.1 | 5spe.2 | 5spf.1 | 5spf.2 | 5spg.1 | 5spg.2 | 5sph.1 | 5sph.2 | 5spi.1 | 5spi.2 | 5spj.1 | 5spj.2 | 5spk.1 | 5spk.2 | 5spl.1 | 5spl.2 | 5spm.1 | 5spm.2 | 5spn.1 | 5spn.2 | 5spo.1 | 5spo.2 | 5spp.1 | 5spp.2 | 5spq.1 | 5spq.2 | 5spr.1 | 5spr.2 | 5sps.1 | 5sps.2 | 5spt.1 | 5spt.2 | 5spu.1 | 5spu.2 | 5spv.1 | 5spv.2 | 5spw.1 | 5spw.2 | 5spx.1 | 5spx.2 | 5spy.1 | 5spy.2 | 5spz.1 | 5spz.2 | 5sq0.1 | 5sq0.2 | 5sq1.1 | 5sq1.2 | 5sq2.1 | 5sq2.2 | 5sq3.1 | 5sq3.2 | 5sq4.1 | 5sq4.2 | 5sq5.1 | 5sq5.2 | 5sq6.1 | 5sq6.2 | 5sq7.1 | 5sq7.2 | 5sq8.1 | 5sq8.2 | 5sq9.1 | 5sq9.2 | 5sqa.2 | 5sqb.1 | 5sqb.2 | 5sqc.1 | 5sqc.2 | 5sqd.1 | 5sqd.2 | 5sqe.1 | 5sqe.2 | 5sqf.1 | 5sqf.2 | 5sqg.1 | 5sqg.2 | 5sqh.1 | 5sqh.2 | 5sqi.1 | 5sqi.2 | 5sqj.1 | 5sqj.2 | 5sqk.1 | 5sqk.2 | 5sql.1 | 5sql.2 | 5sqm.1 | 5sqm.2 | 5sqn.1 | 5sqn.2 | 5sqo.1 | 5sqo.2 | 5sqp.1 | 5sqp.2 | 5sqq.1 | 5sqq.2 | 5sqr.1 | 5sqr.2 | 5sqs.1 | 5sqs.2 | 5sqt.1 | 5sqt.2 | 5squ.1 | 5squ.2 | 5sqv.1 | 5sqv.2 | 5sqw.1 | 5sqw.2 | 5sqx.1 | 5sqx.2 | 5sqy.1 | 5sqy.2 | 5sqz.1 | 5sqz.2 | 5sr0.1 | 5sr0.2 | 5sr1.1 | 5sr1.2 | 5sr2.1 | 5sr2.2 | 5sr3.1 | 5sr3.2 | 5sr4.1 | 5sr4.2 | 5sr5.1 | 5sr5.2 | 5sr6.1 | 5sr6.2 | 5sr7.1 | 5sr7.2 | 5sr8.1 | 5sr8.2 | 5sr9.1 | 5sr9.2 | 5sra.1 | 5sra.2 | 5srb.1 | 5srb.2 | 5src.1 | 5src.2 | 5srd.1 | 5srd.2 | 5sre.1 | 5sre.2 | 5srf.1 | 5srf.2 | 5srg.1 | 5srg.2 | 5srh.1 | 5srh.2 | 5sri.1 | 5sri.2 | 5srj.1 | 5srj.2 | 5srk.1 | 5srk.2 | 5srl.1 | 5srl.2 | 5srm.1 | 5srm.2 | 5srn.1 | 5srn.2 | 5sro.1 | 5sro.2 | 5srp.1 | 5srp.2 | 5srq.1 | 5srq.2 | 5srr.1 | 5srr.2 | 5srs.1 | 5srs.2 | 5srt.1 | 5srt.2 | 5sru.1 | 5sru.2 | 5srv.1 | 5srv.2 | 5srw.1 | 5srw.2 | 5srx.1 | 5srx.2 | 5sry.1 | 5sry.2 | 5srz.1 | 5srz.2 | 5ss0.1 | 5ss0.2 | 5ss1.1 | 5ss1.2 | 5ss2.1 | 5ss2.2 | 5ss3.1 | 5ss3.2 | 5ss4.1 | 5ss4.2 | 5ss5.1 | 5ss5.2 | 5ss6.1 | 5ss6.2 | 5ss7.1 | 5ss7.2 | 5ss8.1 | 5ss8.2 | 5ss9.1 | 5ss9.2 | 5ssa.1 | 5ssa.2 | 5ssb.1 | 5ssb.2 | 5ssc.1 | 5ssc.2 | 5ssd.1 | 5ssd.2 | 5sse.1 | 5sse.2 | 5ssf.1 | 5ssf.2 | 5ssg.1 | 5ssg.2 | 5ssh.1 | 5ssh.2 | 5ssi.1 | 5ssi.2 | 5ssj.1 | 5ssj.2 | 5ssk.1 | 5ssk.2 | 5ssl.1 | 5ssl.2 | 5ssm.1 | 5ssm.2 | 5ssn.1 | 5ssn.2 | 5sso.1 | 5sso.2 | 5ssp.1 | 5ssp.2 | 5ssq.1 | 5ssq.2 | 5ssr.1 | 5ssr.2 | 7fr0.1 | 7fr0.2 | 7fr1.1 | 7fr1.2 | 7fr2.1 | 7fr2.2 | 7fr3.1 | 7fr3.2 | 7fr4.1 | 7fr4.2 | 7fr5.1 | 7fr5.2 | 7fr6.1 | 7fr6.2 | 7fr7.1 | 7fr7.2 | 7fr8.1 | 7fr8.2 | 7fr9.1 | 7fr9.2 | 7fra.1 | 7fra.2 | 7frb.1 | 7frb.2 | 7frc.1 | 7frc.2 | 7frd.1 | 7frd.2 | 7kqo.1 | 7kqo.2 | 7kqp.1 | 7kqp.2 | 7twf.1 | 7twf.2 | 7twg.1 | 7twg.2 | 7twh.1 | 7twh.2 | 7twi.1 | 7twi.2 | 7twj.1 | 7twj.2 | 7twn.1 | 7twn.2 | 7two.1 | 7two.2 | 7twp.1 | 7twp.2 | 7twq.1 | 7twq.2 | 7twr.1 | 7twr.2 | 7tws.1 | 7tws.2 | 7twt.1 | 7twt.2 | 7twv.1 | 7twv.2 | 7tww.1 | 7tww.2 | 7twx.1 | 7twx.2 | 7twy.1 | 7twy.2 | 7tx0.1 | 7tx0.2 | 7tx1.1 | 7tx1.2 | 7tx3.1 | 7tx3.2 | 8c19.1 | 8c19.2 | 8c1a.1 | 8c1a.2 | 8ers.1 | 8ers.2