SMTL ID : 7tww.1 (1 other biounit)

Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ADP-ribose at pH 6 (P43 crystal form)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 0.90 Å

Oligo State

monomer

Ligands

1 x AR6: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE(Non-covalent)

AR6.1: 30 residues within 4Å: Chain A: A.21, D.22, I.23, V.24, A.38, A.39, N.40, K.44, H.45, G.46, G.47, G.48, V.49, A.50, G.51, A.52, P.125, L.126, L.127, S.128, A.129, G.130, I.131, F.132, P.136, A.154, V.155, F.156, D.157, L.160 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:I.23, A:N.40, A:G.46, A:G.47, A:G.47, A:V.49, A:S.128, A:A.129, A:G.130, A:I.131, A:F.132, A:F.156 Water bridges: A:D.22, A:D.22, A:K.44, A:H.45, A:L.126

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 4 residues within 4Å: Chain A: H.138, R.141, V.142, D.145 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:R.141 Hydrogen bonds: A:H.138 Water bridges: A:R.141, A:R.141, A:D.145 Salt bridges: A:H.138, A:H.138, A:R.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Correy, G.J. et al., Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ADP-ribose at pH 6 (P43 crystal form). To Be Published

Release Date

2022-02-23

Peptides

Non-structural protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Non-structural protein 3

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