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SMTL ID : 5su4.1

PanDDA analysis group deposition -- Aar2/RNaseH in complex with fragment P03E02 from the F2X-Universal Library

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

hetero-1-1-mer

Ligands

4 x W8K: N-[(3-bromophenyl)methyl]acetamide(Non-covalent)

W8K.1:	5 residues within 4Å: Chain A: H.56, L.57, F.58, F.157, N.158 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:H.56 pi-Stacking: A:H.56
W8K.2:	9 residues within 4Å: Chain B: P.9, F.10, T.11, Y.72, E.87, K.92, F.93, I.96, F.100 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:P.9, B:Y.72, B:E.87, B:F.93, B:I.96 Hydrogen bonds: B:K.92, B:K.92 pi-Stacking: B:Y.72
W8K.3:	7 residues within 4Å: Chain B: I.21, Y.24, S.25, F.26, V.107, S.108, P.110 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:Y.24, B:Y.24, B:F.26, B:F.26, B:V.107
W8K.4:	10 residues within 4Å: Chain B: F.124, V.125, Q.126, K.129, I.130, F.205, N.210, G.213, E.214, F.217 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:K.129, B:K.129, B:E.214

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Barthel, T. et al., Large-Scale Crystallographic Fragment Screening Expedites Compound Optimization and Identifies Putative Protein-Protein Interaction Sites. J.Med.Chem. (2022)

Release Date

2022-11-02

Peptides

Pre-mRNA-splicing factor 8: A
A1 cistron-splicing factor AAR2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Pre-mRNA-splicing factor 8

A1 cistron-splicing factor AAR2

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