SMTL ID : 5svh.2 (2 other biounits)

Crystal structure of the KIX domain of CBP in complex with a MLL/c-Myb chimera

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-6-6-mer

Ligands

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: T.11, Q.12 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.12 GOL.7: 3 residues within 4Å: Chain B: P.10, S.11, D.12 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.11, B:S.11 GOL.10: 2 residues within 4Å: Chain C: T.11, Q.12 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.12 GOL.16: 3 residues within 4Å: Chain D: P.10, S.11, D.12 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.11, D:S.11 GOL.19: 2 residues within 4Å: Chain E: T.11, Q.12 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:Q.12 GOL.25: 3 residues within 4Å: Chain F: P.10, S.11, D.12 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:S.11, F:S.11 GOL.28: 2 residues within 4Å: Chain G: T.11, Q.12 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:Q.12 GOL.34: 3 residues within 4Å: Chain H: P.10, S.11, D.12 2 PLIP interactions: 2 interactions with chain H Hydrogen bonds: H:S.11, H:S.11 GOL.37: 2 residues within 4Å: Chain I: T.11, Q.12 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:Q.12 GOL.43: 3 residues within 4Å: Chain J: P.10, S.11, D.12 2 PLIP interactions: 2 interactions with chain J Hydrogen bonds: J:S.11, J:S.11 GOL.46: 2 residues within 4Å: Chain K: T.11, Q.12 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:Q.12 GOL.52: 3 residues within 4Å: Chain L: P.10, S.11, D.12 2 PLIP interactions: 2 interactions with chain L Hydrogen bonds: L:S.11, L:S.11

42 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: R.38 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: K.77 Chain H: K.34 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: R.3, K.4, G.5 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: K.82 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain A: R.15 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain B: K.36 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain B: P.22, S.23 Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain C: R.38 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain C: K.77 Chain L: K.34 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain C: R.3, K.4, G.5 Ligand excluded by PLIP CL.14: 1 residues within 4Å: Chain C: K.82 Ligand excluded by PLIP CL.15: 1 residues within 4Å: Chain C: R.15 Ligand excluded by PLIP CL.17: 1 residues within 4Å: Chain D: K.36 Ligand excluded by PLIP CL.18: 2 residues within 4Å: Chain D: P.22, S.23 Ligand excluded by PLIP CL.20: 1 residues within 4Å: Chain E: R.38 Ligand excluded by PLIP CL.21: 2 residues within 4Å: Chain E: K.77 Chain J: K.34 Ligand excluded by PLIP CL.22: 3 residues within 4Å: Chain E: R.3, K.4, G.5 Ligand excluded by PLIP CL.23: 1 residues within 4Å: Chain E: K.82 Ligand excluded by PLIP CL.24: 1 residues within 4Å: Chain E: R.15 Ligand excluded by PLIP CL.26: 1 residues within 4Å: Chain F: K.36 Ligand excluded by PLIP CL.27: 2 residues within 4Å: Chain F: P.22, S.23 Ligand excluded by PLIP CL.29: 1 residues within 4Å: Chain G: R.38 Ligand excluded by PLIP CL.30: 2 residues within 4Å: Chain B: K.34 Chain G: K.77 Ligand excluded by PLIP CL.31: 3 residues within 4Å: Chain G: R.3, K.4, G.5 Ligand excluded by PLIP CL.32: 1 residues within 4Å: Chain G: K.82 Ligand excluded by PLIP CL.33: 1 residues within 4Å: Chain G: R.15 Ligand excluded by PLIP CL.35: 1 residues within 4Å: Chain H: K.36 Ligand excluded by PLIP CL.36: 2 residues within 4Å: Chain H: P.22, S.23 Ligand excluded by PLIP CL.38: 1 residues within 4Å: Chain I: R.38 Ligand excluded by PLIP CL.39: 2 residues within 4Å: Chain F: K.34 Chain I: K.77 Ligand excluded by PLIP CL.40: 3 residues within 4Å: Chain I: R.3, K.4, G.5 Ligand excluded by PLIP CL.41: 1 residues within 4Å: Chain I: K.82 Ligand excluded by PLIP CL.42: 1 residues within 4Å: Chain I: R.15 Ligand excluded by PLIP CL.44: 1 residues within 4Å: Chain J: K.36 Ligand excluded by PLIP CL.45: 2 residues within 4Å: Chain J: P.22, S.23 Ligand excluded by PLIP CL.47: 1 residues within 4Å: Chain K: R.38 Ligand excluded by PLIP CL.48: 2 residues within 4Å: Chain D: K.34 Chain K: K.77 Ligand excluded by PLIP CL.49: 3 residues within 4Å: Chain K: R.3, K.4, G.5 Ligand excluded by PLIP CL.50: 1 residues within 4Å: Chain K: K.82 Ligand excluded by PLIP CL.51: 1 residues within 4Å: Chain K: R.15 Ligand excluded by PLIP CL.53: 1 residues within 4Å: Chain L: K.36 Ligand excluded by PLIP CL.54: 2 residues within 4Å: Chain L: P.22, S.23 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Langelaan, D.N. et al., Design of a nanomolar affinity ligand to the KIX domain of CBP. To Be Published

Release Date

2018-05-09

Peptides

CREB-binding protein: ACEGIK
MLL/c-Myb chimera: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

G
A

I
A

K
A

B
B

D
B

F
B

H
B

J
B

L
B

CREB-binding protein

MLL/c-Myb chimera

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