SMTL ID : 5svh.3 (2 other biounits)

Crystal structure of the KIX domain of CBP in complex with a MLL/c-Myb chimera

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-2-2-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: T.11, Q.12 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.12 GOL.7: 3 residues within 4Å: Chain B: P.10, S.11, D.12 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.11, B:S.11 GOL.10: 2 residues within 4Å: Chain C: T.11, Q.12 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.12 GOL.16: 3 residues within 4Å: Chain D: P.10, S.11, D.12 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.11, D:S.11

14 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: R.38 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: K.77 Chain D: K.34 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: R.3, K.4, G.5 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: K.82 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain A: R.15 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain B: K.36 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain B: P.22, S.23 Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain C: R.38 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain B: K.34 Chain C: K.77 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain C: R.3, K.4, G.5 Ligand excluded by PLIP CL.14: 1 residues within 4Å: Chain C: K.82 Ligand excluded by PLIP CL.15: 1 residues within 4Å: Chain C: R.15 Ligand excluded by PLIP CL.17: 1 residues within 4Å: Chain D: K.36 Ligand excluded by PLIP CL.18: 2 residues within 4Å: Chain D: P.22, S.23 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Langelaan, D.N. et al., Design of a nanomolar affinity ligand to the KIX domain of CBP. To Be Published

Release Date

2018-05-09

Peptides

CREB-binding protein: AC
MLL/c-Myb chimera: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

CREB-binding protein

MLL/c-Myb chimera

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