- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.2: 5 residues within 4Å:- Chain A: G.102, R.103, G.104, D.407, S.474
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.407, A:D.407
NA.10: 5 residues within 4Å:- Chain B: G.102, R.103, G.104, D.407, S.474
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.474
- Water bridges: B:E.108
- 3 x OXY: OXYGEN MOLECULE(Non-covalent)
OXY.3: 6 residues within 4Å:- Chain A: R.88, H.92, D.121
- Ligands: HEM.1, OXY.4, O.6
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.88, A:D.121
OXY.4: 5 residues within 4Å:- Chain A: W.91, H.92
- Ligands: HEM.1, OXY.3, O.6
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:W.91
- Water bridges: A:D.121, A:D.121, A:D.121, A:Y.218, A:V.219, A:V.219
OXY.12: 5 residues within 4Å:- Chain B: R.88, H.92, D.121
- Ligands: HEM.9, O.11
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.88, B:D.121
- Water bridges: B:D.121
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.5: 3 residues within 4Å:- Chain A: K.360, H.361, R.362
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.362
- Salt bridges: A:H.361, A:R.362
PO4.13: 3 residues within 4Å:- Chain B: K.360, H.361, R.362
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.360, B:R.362
- Salt bridges: B:H.361
- 2 x O: OXYGEN ATOM(Non-covalent)
- 3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.7: 2 residues within 4Å:- Chain A: T.303, S.304
No protein-ligand interaction detected (PLIP)MPD.8: 3 residues within 4Å:- Chain A: D.63, P.134, I.135
1 PLIP interactions:1 interactions with chain A- Water bridges: A:K.138
MPD.14: 5 residues within 4Å:- Chain B: P.120, A.270, W.289, T.303, S.304
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:P.120, B:A.270
- Hydrogen bonds: B:W.289
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Carpena, X. et al., A molecular switch and electronic circuit modulate catalase activity in catalase-peroxidases. EMBO Rep. (2005)
- Release Date
- 2016-08-24
- Peptides
- Catalase-peroxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 3 x OXY: OXYGEN MOLECULE(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x O: OXYGEN ATOM(Non-covalent)
- 3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Carpena, X. et al., A molecular switch and electronic circuit modulate catalase activity in catalase-peroxidases. EMBO Rep. (2005)
- Release Date
- 2016-08-24
- Peptides
- Catalase-peroxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B