- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 3 x OXY: OXYGEN MOLECULE(Non-covalent)
OXY.3: 6 residues within 4Å:- Chain A: R.88, H.92, D.121
- Ligands: HEM.1, OXY.4, O.5
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.88, A:D.121
OXY.4: 5 residues within 4Å:- Chain A: W.91, H.92
- Ligands: HEM.1, OXY.3, O.5
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:H.92
- Water bridges: A:I.217, A:Y.218, A:Y.218
OXY.11: 5 residues within 4Å:- Chain B: R.88, H.92, D.121
- Ligands: HEM.9, O.12
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.88, B:R.88
- Water bridges: B:W.91, B:H.92, B:D.121
- 2 x O: OXYGEN ATOM(Non-covalent)
- 3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.6: 4 residues within 4Å:- Chain A: A.123, A.270, T.303, S.304
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:W.289
MPD.7: 3 residues within 4Å:- Chain A: D.63, P.134, K.138
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:K.138
- Hydrogen bonds: A:P.134
- Water bridges: A:K.138
MPD.13: 4 residues within 4Å:- Chain B: V.273, W.289, T.303, S.304
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:V.273
- Hydrogen bonds: B:W.289
- 2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.8: 9 residues within 4Å:- Chain A: A.100, D.101, R.472, V.573, L.574, E.575, P.576, K.600, L.603
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:A.100, A:R.472, A:R.472, A:K.600
- Water bridges: A:S.469, A:V.577, A:K.600
TRS.14: 9 residues within 4Å:- Chain B: A.100, D.101, R.472, V.573, L.574, E.575, P.576, K.600, L.603
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:A.100, B:R.472, B:R.472, B:K.600, B:K.600
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Carpena, X. et al., A molecular switch and electronic circuit modulate catalase activity in catalase-peroxidases. EMBO Rep. (2005)
- Release Date
- 2016-08-24
- Peptides
- Catalase-peroxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 3 x OXY: OXYGEN MOLECULE(Non-covalent)
- 2 x O: OXYGEN ATOM(Non-covalent)
- 3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Carpena, X. et al., A molecular switch and electronic circuit modulate catalase activity in catalase-peroxidases. EMBO Rep. (2005)
- Release Date
- 2016-08-24
- Peptides
- Catalase-peroxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B